Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c09f
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 32 0.40
06_03_1136 - 27897822-27898235,27898344-27898488,27899127-278992... 29 2.1
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 29 2.8
06_01_0144 + 1089090-1091390 29 3.7
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 4.9
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 28 6.5
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 31.9 bits (69), Expect = 0.40
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Frame = +2
Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEIT--SVILRQ 412
RLP P Y++ D+ F+G+V++ + T A +V++A +LE++ V +
Sbjct: 16 RLPGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVT-APTRFLVLNAAELEVSPGGVQFKP 74
Query: 413 GTVTT---PSTYTLQKELQFLRLRLNTGTLVFNAASPV-IYTLTIDFAARLRTDMYGIYR 580
P+ T E + L +R FN PV TL I F L M+G YR
Sbjct: 75 HGAEQELHPAEVTNVPEDEILIIR-------FNEVLPVGEGTLVIAFKGTLNDKMHGFYR 127
Query: 581 T 583
+
Sbjct: 128 S 128
>06_03_1136 -
27897822-27898235,27898344-27898488,27899127-27899204,
27899302-27899400,27900508-27900613,27901323-27901428
Length = 315
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = +2
Query: 272 NVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVILRQGTVTTPSTYTLQK 451
N LWAIDISR T A VSE++ H LE ILR G S T ++
Sbjct: 96 NNLWAIDISRCE---------RITAAAVSEVICHCPSLE----ILRCGG-CPGSESTARR 141
Query: 452 ELQFLRLRLNT 484
+ L+ +LNT
Sbjct: 142 SVYLLKPKLNT 152
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 149 IFL-DEKLEGEIFEDIEAFENIDRSIAASTYRLPTTTRP--LHYNVLWAIDISRLTFSGT 319
+FL + + G I EDI ++ + S +L +T P H + L +D+SR FSG
Sbjct: 516 LFLQNNEFSGSIIEDIGNLTKLEH-LRLSNNQLSSTVPPSLFHLDSLIELDLSRNLFSGA 574
Query: 320 VEIQL 334
+ + +
Sbjct: 575 LPVDI 579
>06_01_0144 + 1089090-1091390
Length = 766
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 514 RRSSIEDESAR-IKAQSQEL*LFLEGVSGGCRDGSLSENHGCDFQVVGMNNYLAYVSPSG 338
+RS ++AR I + +L LE DGS E C+F V+G N + P G
Sbjct: 199 KRSFAHGKNARLISSYMAQLPKLLEVDEHVAADGSRMER--CNFAVMGEENMVLKAGPHG 256
Query: 337 VQLD 326
+LD
Sbjct: 257 YELD 260
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 4.9
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = +2
Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVILR-QG 415
RLP P Y + D++ FSG + + + A +V++A DL + +R QG
Sbjct: 13 RLPRFAAPRRYELRLRPDLAACVFSGEASVAVDVS-APTRFLVLNAADLAVDRASIRFQG 71
Query: 416 TVTTPSTYTLQKELQFLRLRLNTGTLVFNAASPVIYTLTIDFAARLRTDMYGIYRT 583
P+ ++ +E + L L G L L + F L M G YR+
Sbjct: 72 --LAPAEVSVFEEDEILVLEF-AGELPLGEG-----VLAMRFNGTLNDQMRGFYRS 119
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEI 391
RLP PL Y++ D++ FSG+ + + A A +V++A +L +
Sbjct: 13 RLPRCASPLSYDLRLRPDLAACAFSGSAAVAV-AVSAPTRFLVLNAAELAV 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,459
Number of Sequences: 37544
Number of extensions: 348885
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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