Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09f
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 49   3e-06
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                40   0.002
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                39   0.004
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 31   0.53 
SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)          31   0.93 
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_45265| Best HMM Match : CaMBD (HMM E-Value=8.2)                     28   6.6  
SB_46924| Best HMM Match : WD40 (HMM E-Value=1.7)                      27   8.7  
SB_33298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         27   8.7  

>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
 Frame = +2

Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEIT--SVILRQ 412
           RLP    P+HYNV   I +  L F+GT EI L  T+ +   I++H+  + +T  SV+ + 
Sbjct: 240 RLPKNVVPVHYNVYLNIILKELRFTGTSEIHLNVTQ-STDLILVHSARMNVTSGSVMNKA 298

Query: 413 GTVTTPSTYTLQKELQFLRLRLNTGTLVFNAASPVIYTLTIDFAARLRTDMYGIYRTWF 589
           G           ++ QF  L++ T      A  P  Y + + F A L   + G+YR+ +
Sbjct: 299 GDQQAIKKRFWFEKNQFTVLQMET------ALEPGPYVVMLGFEAFLSDQLNGLYRSQY 351


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/119 (21%), Positives = 54/119 (45%)
 Frame = +2

Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVILRQGT 418
           RLPT   P+HY++    +++  TF G VEI L         I++H + + ++   + + T
Sbjct: 94  RLPTNVIPVHYDLFLHPNLTTGTFEGEVEI-LVDVLQETEYILVHTNGMTVSKSSVHEAT 152

Query: 419 VTTPSTYTLQKELQFLRLRLNTGTLVFNAASPVIYTLTIDFAARLRTDMYGIYRTWFRN 595
             +       KE+   +       ++    S   Y + +D+ A   +++ G Y + +++
Sbjct: 153 KESQKEPLAVKEMFEYKENFYYVFIMSEKLSVGRYIVRMDYRAPFSSELNGFYLSTYKD 211


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
 Frame = +2

Query: 215 RSIAASTYRLPTTTRPLHYNVLWAIDISR-LTFSGTVEIQLYATRANVSEIVIHADDLEI 391
           R  A    RLP++  P  Y V+    +    TFSG V +++     +   I IHA  + +
Sbjct: 124 RKFAWQKIRLPSSVTPEEYTVILRPKLDPDFTFSGNVSVRVKCNE-DTDYIFIHAKQMRL 182

Query: 392 TSV-ILRQGTVTTPSTYTLQKE-LQFLRLRLNTGTLVFNAASPVIYTLTIDFAARLRTDM 565
           T   +L QG        T   E L+   +++  G     +     Y L IDF A L   +
Sbjct: 183 TKFEVLNQGKEPLKIMETANCEKLEMFSIKVKGGLKKGES-----YVLQIDFNAVLAEKL 237

Query: 566 YGIYRTWFRN 595
            G Y++ +++
Sbjct: 238 TGFYKSSYKD 247


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEIT 394
           RLPT   P+HY++    +++  TF G VEI L         I++H + + ++
Sbjct: 69  RLPTNVIPVHYDLFLHPNLTTGTFEGEVEI-LVDVLQETEYILVHTNGMTVS 119


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +2

Query: 236  YRLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVIL 406
            +RLPT   P +Y++   +++ +  ++G+V I +  T++    I+     L +T V++
Sbjct: 1445 FRLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVTQVVV 1501


>SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +2

Query: 236 YRLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVIL 406
           +RLPT   P +Y++   +++ +  ++G+V I +  T++    I+     L +T V++
Sbjct: 31  FRLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVTQVVV 87


>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
          Length = 326

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 27/117 (23%), Positives = 47/117 (40%)
 Frame = +2

Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVILRQGT 418
           RLP    P HYN+   I + +  F G V +    TRA  S +++H+    I         
Sbjct: 33  RLPGDVIPTHYNINLNITVDQPHFHGRVNMFANVTRA-TSVLLLHSSKEMIFKRSAVWMV 91

Query: 419 VTTPSTYTLQKELQFLRLRLNTGTLVFNAASPVIYTLTIDFAARLRTDMYGIYRTWF 589
            +TP    ++    F +       +  +      Y + + + A  +   YG+YR+ F
Sbjct: 92  ASTPEERQIKNSFYFDKNEYYVLEMA-DTLKEGRYRVELVYDAPFQILPYGLYRSSF 147


>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 27/101 (26%), Positives = 40/101 (39%)
 Frame = -2

Query: 373 MNNYLAYVSPSGVQLDFNGAREG*PGDINSPKHVVMKRSGGCGQSVCTSGNTSINIFKSL 194
           M  +  + +   V+ DF+       G I  P +   KR  G   + C +G       ++L
Sbjct: 91  MKKFTEWCTKRSVECDFHSISSSDLGGILRPFYAEDKRQEG-PLADCPNGQP---FARTL 146

Query: 193 NILKDFPF*FLVKKYCVVCPVNWFIGESLC*HARRQEDNDL 71
           NILKD  F    K + VVC   +  G     H    E  D+
Sbjct: 147 NILKDAEFLQSNKMFEVVCKSYYKCGNPKPEHKSPIEPGDM 187


>SB_45265| Best HMM Match : CaMBD (HMM E-Value=8.2)
          Length = 150

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 236 YRLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIH 373
           Y +     PLH + + AI ++ +T    +E  + +TR NV   V H
Sbjct: 96  YFIAKIDNPLHSSAVEAILLTYITKRFVIEALILSTRNNVEAFVFH 141


>SB_46924| Best HMM Match : WD40 (HMM E-Value=1.7)
          Length = 134

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 352 RKRDSYSCRRPGNHIRDSQTRNRHDTLHLHPP 447
           R+ + Y+  +P + I D+Q+R RH   H+  P
Sbjct: 79  REDEKYADTQPTSAIDDNQSRLRHQDSHIQQP 110


>SB_33298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 474 RSLRNCNSFWRV*VEGVVTVPCLRITDVISRSSA*ITISLTLARVAY 334
           RS R+C   W+  V  + T+P L + D +      + +  TLA +AY
Sbjct: 6   RSWRSCAIIWKAAVVCLSTLPNLSVDDAVEH----LNLRCTLAVIAY 48


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 352 RKRDSYSCRRPGNHIRDSQTRNRHDTLHLHPP 447
           R+ + Y+  +P + I D+Q+R RH   H+  P
Sbjct: 178 REDEKYADTQPTSAIDDNQSRLRHQDSHIQQP 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,175,662
Number of Sequences: 59808
Number of extensions: 404126
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)