Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c09f
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    31   0.44 
At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari...    29   1.8  
At1g26450.1 68414.m03226 beta-1,3-glucanase-related similar to b...    28   4.1  
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2...    27   7.2  
At3g47700.1 68416.m05196 chromosome structural maintenance prote...    27   9.5  
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)...    27   9.5  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
 Frame = +2

Query: 239 RLPTTTRPLHYNVLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVILRQGT 418
           RLP    P  Y++    D+   TF+GTV I L    A+   IV++A DL +    +    
Sbjct: 9   RLPKFAVPKRYDLRLNPDLIACTFTGTVAIDLDIV-ADTRFIVLNAADLSVNDASVSFTP 67

Query: 419 VTTPSTYTLQKELQFLRLRLNTGTLVFNAASP-VIYTLTIDFAARLRTDMYGIYRTWFRN 595
            ++       K + F    +    L F    P  +  L + F   L   M G YR+ + +
Sbjct: 68  PSSSKALAAPKVVLFEEDEIL--VLEFGEILPHGVGVLKLGFNGVLNDKMKGFYRSTYEH 125


>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
           to elicitor inducible beta-1,3-glucanase NtEIG-E76
           [Nicotiana tabacum] GI:11071974
          Length = 222

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 436 SGGCRDGSLSENHGCDFQVVGMNNYLAYVSPSGVQLDFNGA 314
           +G C   +  +NH CD   V +N+Y    + SG   DFNGA
Sbjct: 52  TGACYQPNTVKNH-CD---VAVNSYYQKKASSGATCDFNGA 88


>At1g26450.1 68414.m03226 beta-1,3-glucanase-related similar to
           beta-1,3-glucanase GI:15150341 from [Camellia sinensis];
           C-terminal homology only
          Length = 197

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 436 SGGCRDGSLSENHGCDFQVVGMNNYLAYVSPSGVQLDFNGA 314
           +G C   +  +NH CD   V +N+Y    + +G   DFNGA
Sbjct: 52  TGACYQPNTLKNH-CD---VAVNSYYQKKASTGATCDFNGA 88


>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
           plant glutamate receptor family, PMID:11379626
          Length = 829

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +2

Query: 275 VLWAIDISRLTFSGTVEIQLYATRANVSEIVIHADDLEITSVILRQGTVTTPSTYTLQKE 454
           V+W   +  LT S T  +    T   +   V H DDL  + V +  G  T   T+   K+
Sbjct: 577 VVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDLRKSGVNI--GYQTGSFTFERLKQ 634

Query: 455 LQFLRLRLNT 484
           ++F   RL T
Sbjct: 635 MRFDESRLKT 644


>At3g47700.1 68416.m05196 chromosome structural maintenance
           protein-related contains weak similarity to
           RAD50-interacting protein 1 [Homo sapiens]
           gi|11967435|gb|AAG42101
          Length = 795

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 491 LVFNAASPVIYTLTIDFAARLRTDM---YGIYRTW 586
           L FN+        T D   RL+ DM   YG++RTW
Sbjct: 702 LFFNSILMANVKFTNDGVERLKVDMEVLYGVFRTW 736


>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
           family protein similar to cytosolic leucyl-tRNA
           synthetase [Candida albicans] GI:9858190; contains Pfam
           profile PF00133: tRNA synthetases class I (I, L, M and
           V)
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 36  CLY*NLSRWRITRSLSSWRRAC*HRLSPMNQFTGQTTQYF 155
           C+     +W IT   S WR+     LS MN ++ +T   F
Sbjct: 525 CVVALTDQWYITYGESEWRKIAEECLSKMNLYSDETRHGF 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,145,395
Number of Sequences: 28952
Number of extensions: 268770
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)