Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c08r
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               32   0.37 
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         30   2.0  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.0  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   2.6  
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   6.0  
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)                     28   7.9  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     28   7.9  
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 327 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 437
           +G HQGH+ N    +GH G V +++H   TRS G  Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814


>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 465 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDERGKLSRNEGSDV 614
           N+ G    L+  I LFR    N    GS  DV K+ DER   ++   SDV
Sbjct: 23  NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDERLDTTKFVESDV 72


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +3

Query: 294 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 461
           +R  +G    DHGG    H G   +    R  +GG   DH G  R  G   R     GR 
Sbjct: 2   SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60

Query: 462 SNDHGRNSR 488
             DHG   R
Sbjct: 61  --DHGGTGR 67



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
 Frame = +3

Query: 297 RGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRIS 464
           R H G    DHGG +   G     H   G + GG   DH G  R  G   R     GR  
Sbjct: 11  RDHGG-TGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR-- 67

Query: 465 NDHGRNSR 488
            DHG   R
Sbjct: 68  -DHGGTGR 74



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
 Frame = +3

Query: 297 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 464
           R H G    DHGG    H G   +    R  +GG   DH G  R  G   R     G   
Sbjct: 60  RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115

Query: 465 NDHGRNSR 488
            DHG   R
Sbjct: 116 RDHGGTRR 123


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +3

Query: 300 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 464
           GH+   SH++ GH     GH    H     N G SH H G++  + G+++    +    S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369

Query: 465 NDHGRNSRLF 494
           ++H     L+
Sbjct: 370 HEHEPKQDLY 379



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 327 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 482
           HG   GH    H     N G SH++ G++    N+  +  + G   ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 587 LTPLVHILININDAASATPVESVEPEQSNVEE 492
           LT   H+LIN+ND     PV S    QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +3

Query: 297 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 476
           R H+ R  H HGG  G+  +     GH GG  H H G     G+     + DG     HG
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 294 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 434
           A GH   ++H H     H      A  H  G++H H   T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 306  NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 416
            +GR++   GG     H+++    RG  GGVS  H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 321 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 488
           H HGG +   T+ H   + H+    H HR +     + +      GR ++DH    R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473


>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 364 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 498
           G+G +++G   + G  L   A + G+G + AG+ ++   + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 413
           HD+GGH       H+  GH+ G+ HD+ G+T
Sbjct: 83  HDYGGHD------HYDGGHHDGMHHDY-GHT 106


>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 306 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 410
           +G  SHD  G   H  +   + GH+G  SHD  G+
Sbjct: 5   DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,098,830
Number of Sequences: 59808
Number of extensions: 219735
Number of successful extensions: 754
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)