Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c07r
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    26   0.37 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   0.48 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    25   0.48 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   5.9  

>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 318 HLAESGAHAPCQINILHKFIHHYFIEK 398
           H ++   H   ++  LH+F HH F+E+
Sbjct: 115 HQSKFNPHEEVKLQHLHQFPHHDFLER 141


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 60  NFVLTILIKHNIDVFNLNFKYTPFLTPLIYKCCRIFIKVKKSLEKC*NIGFLY 218
           NF+  + I HN  +   N   T F  PL+ K    F+ +  SL  C   G++Y
Sbjct: 215 NFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCSLYFC-IFGYIY 266


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 60  NFVLTILIKHNIDVFNLNFKYTPFLTPLIYKCCRIFIKVKKSLEKC*NIGFLY 218
           NF+  + I HN  +   N   T F  PL+ K    F+ +  SL  C   G++Y
Sbjct: 40  NFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCSLYFC-IFGYIY 91


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 3   ILNYKR*SNIMLIHVYFKDNFVLTILIKHNIDVFNLNFKYTPFLTPL 143
           I+NY+       IH++ +  FV + L+       N  +KY   L+ L
Sbjct: 122 IINYENQRTRSRIHLFVRYVFVTSYLLFDYFVQRNQEYKYYQILSHL 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,511
Number of Sequences: 336
Number of extensions: 3908
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)