Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c07r
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   6.4  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   8.5  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   8.5  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 495 LYNRVAFLQHRYIIPRPVSSH 433
           LY  +  L H++I+P P SSH
Sbjct: 178 LYAPLHKLHHKWIVPTPYSSH 198


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 661 CNAGRDCVSCQYWKKHCV 714
           CN G+ C+SC+     CV
Sbjct: 49  CNGGQPCISCKTLNIECV 66


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 603 YSLSINLSINALTICQGRLWTPCLHG-SIKIF 511
           YSL    +INAL     R W     G SI+IF
Sbjct: 228 YSLEAKANINALVFSPNRYWLCAATGSSIRIF 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,991
Number of Sequences: 5004
Number of extensions: 61009
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)