Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c07r
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    29   3.9  
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    28   8.9  

>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 3    ILNYKR*SNIMLIHVYFKDNFVLTILIKHNIDVFNL-NFKYTPFLTPLIYKCCR 161
            IL YK    ++ +HV FK N+ L       +D F+L   + TP +T L+ KC R
Sbjct: 1087 ILEYKPELELLGVHVAFKQNYQLL------VDNFSLIRDQITPDVTILMLKCLR 1134


>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 506 HKKILMDPWRQGVHNR 553
           H K+ +DPWRQGV  R
Sbjct: 751 HYKLYIDPWRQGVLQR 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,511
Number of Sequences: 37544
Number of extensions: 325973
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)