Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c07r
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            29   3.9  
SB_26486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 28   9.1  

>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 579 INALTICQGRLWTPCLHGSIKIFLCYIM---LYNRVAFL 472
           +  + +CQ +L+TP +   +++F C ++   L+ RV FL
Sbjct: 48  VTCIVLCQLQLFTPIVLCQLQLFTCIVLCQQLFTRVLFL 86


>SB_26486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 283 IRLDVSKTQLTGTWLRVGLTLRVK*TSYTNLYITILLKN 399
           +  D   TQL  TW R G  +RVK     NL  T LL++
Sbjct: 16  LHYDSHFTQLHKTWEREGALIRVKAVFSINLVPTALLRS 54


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 87  HNIDVFNLNFKYTPFLTPL-IYKCCRIFIKVKKSLEKC*NI 206
           H I++   +   T F  P  +Y+CCR+   V  + EK  NI
Sbjct: 365 HQIELHPYSRDITTFTAPTGLYRCCRLLFGVYMASEKFQNI 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,126,604
Number of Sequences: 59808
Number of extensions: 427676
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)