Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c07r
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21230.1 68417.m03070 protein kinase family protein contains ...    28   7.4  
At4g00210.1 68417.m00022 LOB domain protein 31 / lateral organ b...    28   7.4  

>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 606 FYSLSINLSINALTICQG 553
           FY++SIN  +NA+ +C+G
Sbjct: 68  FYNISINGEVNAIALCRG 85


>At4g00210.1 68417.m00022 LOB domain protein 31 / lateral organ
           boundaries domain protein 31 (LBD31) identical to
           SP|O81322 LOB domain protein 31 {Arabidopsis thaliana}
          Length = 215

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 646 LSGCACNAGRDCVSCQYWKKHCVADAATA 732
           +SG     G  C +C++ ++ CVAD   A
Sbjct: 1   MSGSTTGCGGPCGACKFLRRKCVADCVFA 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,535,423
Number of Sequences: 28952
Number of extensions: 287077
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)