Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c07f
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 243 1e-65
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 242 3e-65
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 202 2e-53
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 200 1e-52
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 180 9e-47
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 167 9e-43
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 86 3e-18
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 85 5e-18
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 79 4e-16
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 77 1e-15
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 74 1e-14
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 71 1e-13
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 70 2e-13
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 70 2e-13
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 65 7e-12
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 64 9e-12
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 62 5e-11
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 60 2e-10
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 37 0.002
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.76
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 1.3
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 1.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.3
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 4.0
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 5.3
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 5.3
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 7.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 7.0
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 243 bits (595), Expect = 1e-65
Identities = 107/146 (73%), Positives = 127/146 (86%)
Frame = +3
Query: 93 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 272
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 273 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 452
EDYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRN
Sbjct: 65 EDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRN 124
Query: 453 DPATINELRKMKQEPVKPQEGRAMAE 530
DP TI EL K Q+P+ +EG+ +A+
Sbjct: 125 DPKTIEELSKTSQKPITFEEGQVVAQ 150
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 242 bits (592), Expect = 3e-65
Identities = 109/146 (74%), Positives = 125/146 (85%)
Frame = +3
Query: 93 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 272
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 273 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 452
EDYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRN
Sbjct: 65 EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRN 124
Query: 453 DPATINELRKMKQEPVKPQEGRAMAE 530
DP I EL K Q PV +EG+A+A+
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQ 150
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 202 bits (494), Expect = 2e-53
Identities = 94/155 (60%), Positives = 113/155 (72%), Gaps = 2/155 (1%)
Frame = +3
Query: 69 ESSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQV 242
+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + K +
Sbjct: 5 KKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVI 64
Query: 243 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPII 422
ELALWDTAGQE+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+
Sbjct: 65 ELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIV 124
Query: 423 LVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMA 527
LVG K DLR D LR PV Q+ +++A
Sbjct: 125 LVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVA 159
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 200 bits (487), Expect = 1e-52
Identities = 90/146 (61%), Positives = 110/146 (75%)
Frame = +3
Query: 93 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 272
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 273 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 452
E+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+
Sbjct: 67 EEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRS 126
Query: 453 DPATINELRKMKQEPVKPQEGRAMAE 530
DP I E+R+ Q VK Q+ +A+
Sbjct: 127 DPVAIEEMRRRNQNFVKSQQAELVAQ 152
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 180 bits (439), Expect = 9e-47
Identities = 79/142 (55%), Positives = 102/142 (71%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 281
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 282 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPA 461
DRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPS 124
Query: 462 TINELRKMKQEPVKPQEGRAMA 527
+L + Q P+ ++G +A
Sbjct: 125 VQQKLARQHQHPLTHEQGERLA 146
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 167 bits (406), Expect = 9e-43
Identities = 76/119 (63%), Positives = 93/119 (78%)
Frame = +3
Query: 93 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 272
I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +EL+LWDTAGQ
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQ 71
Query: 273 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 449
E+YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DLR
Sbjct: 72 EEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLR 130
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 86.2 bits (204), Expect = 3e-18
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 278
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 443
+ + Y IL+ + V S +N+ ++ +H NV IL+GNK D
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 85.4 bits (202), Expect = 5e-18
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 278
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 446
+ + Y I++ + V DS N+ ++W E+ + V +LVGNK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNRLLVGNKSDM 125
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 79.0 bits (186), Expect = 4e-16
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Frame = +3
Query: 84 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-GKQVELALW 257
+ I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D V+L +W
Sbjct: 10 VVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIW 69
Query: 258 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP-NVPIILVGN 434
DTAGQE Y L P+ Y + + ++ + + SLE + W E++ P + I L GN
Sbjct: 70 DTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAPEGIVIALAGN 128
Query: 435 KKDLRNDPATINE 473
K DL + + +
Sbjct: 129 KLDLAQERRAVEK 141
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 77.4 bits (182), Expect = 1e-15
Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Frame = +3
Query: 90 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 263
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 264 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 440
AGQE + L P D+ V ++ + + + +S N EKW +V+ +V I+LVGNK
Sbjct: 68 AGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKT 126
Query: 441 DLRNDPATINELRKMKQEPVK 503
DL + E + K + +K
Sbjct: 127 DLADKRQVTQEEGEKKAKELK 147
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 74.1 bits (174), Expect = 1e-14
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 278
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN----VPIILVGNKKD 443
+ L Y D ++ ++V++ S +++ E W E + P I+VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 70.5 bits (165), Expect = 1e-13
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 281
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
Query: 282 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 446
+R + L+ +++ S S + I + ++ P++LV NK DL
Sbjct: 70 SAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL 125
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 70.1 bits (164), Expect = 2e-13
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 278
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 449
LR Y ++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 70.1 bits (164), Expect = 2e-13
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 278
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 446
Y + Y L+ + + S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVGNKTDL 127
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 64.9 bits (151), Expect = 7e-12
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 6/134 (4%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 278
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 443
+ L Y D ++ + V++ S E + + W E + P+ P IL+GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDEFLIQASPSNPETFPFILLGNKVD 128
Query: 444 LRNDPATINELRKM 485
+ +++ + +
Sbjct: 129 VEEQKRMVSKSKAL 142
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 64.5 bits (150), Expect = 9e-12
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 266
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 267 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKD 443
GQE + + Y ++ + V + DS E + W +++ P+ + ++L G+K D
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPSTICVVLAGSKSD 129
Query: 444 LRN 452
L+N
Sbjct: 130 LQN 132
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 62.1 bits (144), Expect = 5e-11
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 260
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 261 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNK 437
TAGQ++Y L ++ +S+ S S E + + H VPI++VGNK
Sbjct: 61 TAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNK 120
Query: 438 KDLRNDPATINE 473
DL A E
Sbjct: 121 SDLHMQRAVTAE 132
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 278
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 443
+ + P+ D IL F + +L +I E W + + F IL+G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-WYRQARGFNKTAVPILIGTKYD 125
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 37.1 bits (82), Expect = 0.002
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +3
Query: 102 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ-VELALWDTAGQED 278
++VI GD GK+ L+ ++ +P VF D V L L DT Q D
Sbjct: 5 RVVICGDQGVGKSSLISALIQED-NVTSIPKVFPIISIPSNPDSNDDVSLVLVDT--QSD 61
Query: 279 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 452
+ L+ ++C S E + W P + NVPI+L NK +DL N
Sbjct: 62 SNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
Score = 33.5 bits (73), Expect = 0.020
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +3
Query: 111 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 290
+VG +CGKT LL F + + TV V +E Q L L G+ D D L
Sbjct: 426 VVGSKSCGKTALLSSFINNNTNRLTPNTV----VNSVEFQSTQRYLVL-SEIGETDLDIL 480
Query: 291 -RPLSYPDTDVILMCFSVDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDPA 461
P S D++ + + +P+S I P+++ +P + K DL
Sbjct: 481 AEPKSLEACDILCLLYDSSNPNSFSFIANLLNLYPDLQ----KIPCVFAATKADLD---- 532
Query: 462 TINELRKMKQEPVKPQE 512
R+ ++ PV+P E
Sbjct: 533 -----RQQQRYPVQPDE 544
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.76
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 9 DEQRRLKKVSIKPIFRRN*PESSGPMAAIRKK--LVIVGDGACGKTCLL 149
D +R+ + + I + P + I KK ++VGD A GKTC+L
Sbjct: 1838 DVERQKTLLDSQNILQSQLPVLESVITCINKKWPCILVGDTATGKTCIL 1886
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -2
Query: 265 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 143
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 263 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 153
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 189 PTVFENYVADIEVDGKQVELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSV 341
P +FE+ I+ G V+L LW AG+ E DR+ P + LM F +
Sbjct: 1162 PFIFEDVERAIDPSGTNVDL-LWRAAGKFELLDRILPKLFLTGHKTLMFFQM 1212
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 151 ISRHVLPHAPSPTITNFLRIAAIGPED 71
I H+LP+ TITNF R+ G D
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPGFTD 214
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 351 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 449
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 84 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 227
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 175 RKYTCRQCLRITLPTSKWMENKWNWL 252
++++CRQ + + S WM+ +W+
Sbjct: 455 QRFSCRQLYGLAVQASMWMQIPCDWV 480
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 402 RSALPQGSTSLGCSRANPASPP 337
+SA Q TSLG + NP PP
Sbjct: 463 KSAENQPPTSLGINNGNPVMPP 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,190
Number of Sequences: 5004
Number of extensions: 46876
Number of successful extensions: 209
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -