Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06r
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2RLE1 Cluster: Transcriptional regulator, IclR family;...    34   4.1  
UniRef50_A2DYQ3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q556E5 Cluster: Putative uncharacterized protein; n=2; ...    33   9.4  

>UniRef50_Q2RLE1 Cluster: Transcriptional regulator, IclR family;
           n=2; Thermoanaerobacteriaceae|Rep: Transcriptional
           regulator, IclR family - Moorella thermoacetica (strain
           ATCC 39073)
          Length = 268

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +1

Query: 301 VG*SKTIANINRQKKLHLRIVSRIKYAIGKCEQHAILSKKVIGIKLLTNSGSLL 462
           +G S+    +N  K    R++S +K A G  +Q     K V+G+K+L  SGSLL
Sbjct: 28  IGLSELSRRLNLNKSTVYRMLSTLK-AYGYVDQEETTEKYVLGLKILDLSGSLL 80


>UniRef50_A2DYQ3 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 474

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 161 RKICMHYMRSILNCV*LHYFYSNIKKDHCQQKSLKC 268
           +  C+ YM+   N + + YF  + K +HCQ K  KC
Sbjct: 411 KDFCIDYMKDFANHLNVSYFPVHKKPEHCQCKDFKC 446


>UniRef50_Q556E5 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 555

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = -3

Query: 512 IRPFTLIILKFHINVWIKREPELVSNLMPITFFDNIACCSHLPIAYFILETIRRCSFFCL 333
           I PFT++    +I  W+K       +L+  +FF  +       + +F+   I     F +
Sbjct: 186 ILPFTIVFSLLYIWAWLKLAANHAESLIKYSFFGAMGLMIGYCVFFFVWGAIYLGIIFAI 245

Query: 332 LMFAIVLDY 306
           + F I+L Y
Sbjct: 246 MAFFIILFY 254


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,024,288
Number of Sequences: 1657284
Number of extensions: 11862632
Number of successful extensions: 22833
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22792
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)