Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06r
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   6.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.3  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   8.3  

>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 527 LSDLTIRPFTLIILKFHINVWIKREPELV 441
           LS L I PFTL+ +K  IN      P+L+
Sbjct: 90  LSGLCIIPFTLLFMKKDINSLQTLNPDLI 118


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 440 SNLMPITFFDNIACCSHLPIAYFILET---IRRCSFFCLLMFAIVL 312
           S+ +P+T   NI   +  P+A +++ET    RR    C L+ +I +
Sbjct: 9   SSKLPVTGIYNILLFNLFPLATYLVETFCFFRRWKIACTLLCSITV 54


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 230 YYYKNNVIKHNLEYFSCNAY 171
           Y+Y+N++I +++EY    +Y
Sbjct: 101 YFYENDIIDYDIEYIEQKSY 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,157
Number of Sequences: 5004
Number of extensions: 57196
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)