Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06r
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            29   3.8  
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)         29   5.0  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_20827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)          28   8.8  

>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 416 FDNIACCSHLPIAYFILETIRRCSFFCLLMFAIVLDY 306
           F +++CC+H  +  F+L++I   S  CL+      D+
Sbjct: 182 FLHLSCCAHSQLYQFVLDSIDAFSEICLVCIGAPQDF 218


>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
          Length = 1461

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 536 TLLLSDLTIRPFTLI-ILKFHINVWIKREPELVSNLMPITFFDNI 405
           T  L  L   PF L  +++ H++ W  +EPE+VS +    + D++
Sbjct: 659 TRALFGLAPSPFLLGGVIEAHLDTWEDKEPEVVSRIRKELYVDDL 703


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 536 TLLLSDLTIRPFTLI-ILKFHINVWIKREPELVSNLMPITFFDNI 405
           T  L  L   PF L  +++ H++ W ++EPE+VS +    + D++
Sbjct: 527 TRALFGLAPSPFLLGGVIEPHLDTWEEKEPEVVSRIRKELYVDDL 571


>SB_20827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 242 HCQQKSLKCGYC 277
           HC +K  KCGYC
Sbjct: 354 HCSEKPFKCGYC 365


>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 84  DLHISYHIISYKCFQKATVPCLLHHYEKY 170
           D H+ YH+ SY  F  ++   L++H   Y
Sbjct: 374 DYHLMYHMTSYARFNSSSYYYLMYHMTSY 402


>SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)
          Length = 840

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 527 LSDLTIRPFTLI-ILKFHINVWIKREPELVSNLMPITFFDNI 405
           L  L   PF L  +++ H++ W  +EPE+VS +    + D++
Sbjct: 218 LFGLAPSPFLLGGVIEAHLDTWEDKEPEVVSRIRKELYVDDL 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,618,808
Number of Sequences: 59808
Number of extensions: 365961
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)