Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06r
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-11|AAA97968.1|  299|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   7.8  

>U55363-11|AAA97968.1|  299|Caenorhabditis elegans Hypothetical
           protein ZC404.10 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 476 INVWIKREPELVSNLMPITFFDNIACCSHLPIAYFILETIRRCSFFCLLMFAIVL 312
           +N W   E     +L+ I+ F N    S+ P  YFIL  +   +FF  ++  IVL
Sbjct: 11  LNQWPDPETGDAKDLV-ISQFINTVVLSYRPFHYFILACVVIFAFFANILILIVL 64


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 77  IARFTHKLPYYKL*VFSKSHSSMFATSLRKICMHYMRSIL 196
           I RF   +PY  L  FSKSH   F+ +  K+ ++ + ++L
Sbjct: 378 IRRFNANVPYSGL-RFSKSHEGFFSENKGKVIVNAIEAVL 416


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 77  IARFTHKLPYYKL*VFSKSHSSMFATSLRKICMHYMRSIL 196
           I RF   +PY  L  FSKSH   F+ +  K+ ++ + ++L
Sbjct: 378 IRRFNANVPYSGL-RFSKSHEGFFSENKGKVIVNAIEAVL 416


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 77  IARFTHKLPYYKL*VFSKSHSSMFATSLRKICMHYMRSIL 196
           I RF   +PY  L  FSKSH   F+ +  K+ ++ + ++L
Sbjct: 378 IRRFNANVPYSGL-RFSKSHEGFFSENKGKVIVNAIEAVL 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,763
Number of Sequences: 27780
Number of extensions: 306603
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)