Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06f
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7GYP2 Cluster: Dihydrodipicolinate synthase; n=4; Camp...    33   3.5  
UniRef50_A2E7S5 Cluster: Putative uncharacterized protein; n=1; ...    33   3.5  
UniRef50_Q919J1 Cluster: CUN085 putative occlusion body protein;...    32   8.1  

>UniRef50_A7GYP2 Cluster: Dihydrodipicolinate synthase; n=4;
           Campylobacter|Rep: Dihydrodipicolinate synthase -
           Campylobacter curvus 525.92
          Length = 261

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 14  ETSLTTRLTKHLSQFINIVYIPYP-INESTKIIGQCTSNENGTK*RLYNFESFV 172
           +T L  ++T  LS+  NI++ P+P  NE+T I   C       K  + NFE F+
Sbjct: 43  KTFLLNKITADLSEQQNIIFFPHPFFNEATFIRALCERLFGEKKDGIENFEIFI 96


>UniRef50_A2E7S5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 744

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
 Frame = +3

Query: 126 TRMELNEDYTILKALYPGRNVKICC*YTHIKFDFNQTMITTLSANAHL*KAAATLFQATN 305
           T +E   DYT+    YP         Y   ++  N T +  +S   ++    +  F +TN
Sbjct: 245 TNLESKADYTLY---YPSFTKTWAVTYAQAQYTTNTT-VKYMSFVTNMNDVLSATFISTN 300

Query: 306 IAIIKVNACDFVSHNKWR-----EATVTYKCAARLLIESVIKHYS*VMASRRLMRRAQYT 470
            +II+V+  ++  +N W       ATVTY       ++  + +Y+ ++++        YT
Sbjct: 301 NSIIQVDE-NYTGNNIWAYIRISTATVTYTLEDNTKLKLTMTNYAYILSNNNSFSAGYYT 359

Query: 471 IQY 479
             Y
Sbjct: 360 FTY 362


>UniRef50_Q919J1 Cluster: CUN085 putative occlusion body protein;
           n=1; Culex nigripalpus NPV|Rep: CUN085 putative
           occlusion body protein - Culex nigripalpus NPV
          Length = 882

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 20/92 (21%), Positives = 41/92 (44%)
 Frame = -1

Query: 470 SILGSSHKATARHYLAIVFNYTLDQKTSGALIRDRRFSPLIVAHKVTCIYFNNCNIGRLE 291
           S++G +H+ T + Y A VF     + T  A+         ++A     +YF N N+  + 
Sbjct: 622 SMIGHNHRRTGKLYSAEVFITAAGEGTYDAI--------KVIARYFDLLYFTNANVLEVR 673

Query: 290 QRRGCFSQMCVRTQSCNHRLIKIKFYMCILAT 195
           + R  ++Q+      C+   +K ++   +  T
Sbjct: 674 EIRKLYTQLKNEYDGCDPAQVKPRYRYAVAIT 705


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,850,937
Number of Sequences: 1657284
Number of extensions: 9708737
Number of successful extensions: 19356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19354
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)