Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06f
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   3.2  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   3.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 328 AFTLIIAILVAWNSVAAAFHKCAFALKVVIIV*LKSNFIC 209
           AF L ++I V  +  + +FH+    +K+V++   +++  C
Sbjct: 38  AFFLALSIGVVVSIYSKSFHRNEIHIKIVLMFFKEASLYC 77


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 41  KHLSQFINIVYIPYP 85
           K++S+FIN+V   YP
Sbjct: 297 KNISEFINVVLNNYP 311


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 104 SS*IRLLDMECKLC 63
           SS  R+LD+ CK+C
Sbjct: 28  SSSSRILDIPCKVC 41


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 104 SS*IRLLDMECKLC 63
           SS  R+LD+ CK+C
Sbjct: 28  SSSSRILDIPCKVC 41


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory
          receptor candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 34 IDKTSVTIY*HSLHSISNKR 93
          + K   T+   SLHS+ NKR
Sbjct: 14 VKKRKCTVSNVSLHSLKNKR 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,495
Number of Sequences: 336
Number of extensions: 2884
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)