Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06f
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    31   0.089
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.5  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.9  

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 31.5 bits (68), Expect = 0.089
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 346 WLTKSHAFTLIIAILVAWNSVAAAFHKC 263
           WL +S AFT+ + +L  W  ++ + H+C
Sbjct: 53  WLLRSRAFTMRLLVLARWVHLSPSVHRC 80


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 29  TRLTKHLSQFINIVYIPYPINESTKIIGQCTSNENGT 139
           TR+   + +F ++ Y+  PINE  +++ +  S E  T
Sbjct: 845 TRILNEIKKFQSVGYMFNPINEVQELLNEVISRERNT 881


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 19  ESNYSIDKTSVTIY*HSLHSISNKRIYEDNWTVYVKREW 135
           +  Y  D+  +T Y H+   I  + +  D + VY  R W
Sbjct: 687 DGEYQWDRKKLTFYYHAKQRIDFRELVRDLFKVYKTRIW 725


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 298 AWNSVAAAFHKCAFALKVVIIV*LKS 221
           AWNS+  +++ C   L+  +I  LKS
Sbjct: 535 AWNSLETSYYNCMTVLEDEVIAQLKS 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,742
Number of Sequences: 5004
Number of extensions: 44743
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)