Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06f
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0377 - 4970034-4970687                                           31   0.85 
04_04_0146 + 23106325-23108154                                         29   2.0  
10_06_0015 + 9655405-9655481,9655588-9655744,9656073-9656126,965...    29   2.6  
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806...    29   2.6  
12_01_0909 - 8828921-8829004,8829204-8829249,8829798-8829919,883...    29   3.4  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   6.0  
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056...    27   7.9  

>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 353 LIVAHKVTCIYFNNCNIGRLEQRRGCFSQMCVRTQSC 243
           +I  H + C  F  C +GR     GC S  C  +Q C
Sbjct: 28  MICPHNLCCSQFGYCGLGRDYCGTGCQSGACCSSQRC 64


>04_04_0146 + 23106325-23108154
          Length = 609

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 311 CNIGRLEQRRGCFSQMCVRTQSCN 240
           C +GR+E  RG F +MC R    N
Sbjct: 321 CRVGRIEDARGVFEKMCGRGMKPN 344


>10_06_0015 +
           9655405-9655481,9655588-9655744,9656073-9656126,
           9656361-9657014,9657124-9657310,9657893-9657900,
           9658288-9658305
          Length = 384

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 414 KHYS*VMASRRLMRRAQYTIQY-KPILLL 497
           K Y  + A RRL++R+QY +QY +PI LL
Sbjct: 339 KLYGCLGAFRRLLQRSQYQVQYGRPIQLL 367


>01_01_1022 -
           8064032-8064657,8064823-8064893,8065926-8066047,
           8066540-8066689,8067153-8067179,8067485-8067552,
           8067679-8067874
          Length = 419

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 83  PINESTKIIGQCTSNENGTK*RLYNFESFVPWPKRENMLLIYTYKI 220
           PI E+  I+G CTS       R+      V WP R+ ++ +  YK+
Sbjct: 57  PIAEAASILGVCTS----VLKRICRSHGIVRWPYRKQLVALTIYKL 98


>12_01_0909 -
           8828921-8829004,8829204-8829249,8829798-8829919,
           8830013-8830078,8830520-8830771,8830859-8830939,
           8831193-8831294,8831373-8831410,8831497-8831602,
           8831694-8831816,8831918-8831994,8833095-8833240,
           8833355-8833533
          Length = 473

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 213 YVYISNIFSRFGQGTKLSKLYSLHLVPFSFDVHCPIIFVDSFIGYGM 73
           +VY    F+ F  G     L  LHL P+S+     +I++DS  G G+
Sbjct: 104 FVYEHGPFN-FESGGSAKSLPKLHLNPYSWSKVSSVIYLDSPAGVGL 149


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 347 VAHKVTCIYFNNCNIGRLEQRRGCFSQMCVRTQSCNH 237
           + H   C+Y+NN N  + ++ R C      +  +C H
Sbjct: 618 MVHAFECMYYNNLNATKQQKVRSCGGPCHRKLPNCPH 654


>03_05_0841 -
           28104977-28105142,28105439-28105502,28105586-28105655,
           28105743-28105852,28106217-28106295,28106610-28106691,
           28106791-28106879,28107351-28107425,28107728-28107862,
           28108018-28108163,28108380-28108491
          Length = 375

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 57  NCDRCFVNRVVRLVSIC 7
           NCD CF +R +R  S+C
Sbjct: 59  NCDNCFASRNLRKCSVC 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,863
Number of Sequences: 37544
Number of extensions: 248691
Number of successful extensions: 416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)