Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06f
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical p...    27   7.1  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical
           protein C41G6.16 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 284 RGCFSQMCVRTQSCNHRLIKIKFYM 210
           R C+ + C+ +  CN +L+K+K ++
Sbjct: 333 RKCYRKACIFSGPCNTKLLKLKIFV 357


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 268 CEKQPRRCSKRPILQLLK*MHVTL*ATISGEKRRSRISAPLVF*SRV*LNTIAK*WRAVA 447
           C+++P  C K P   +L  + V      +    R   SAP V   RV    I +  + +A
Sbjct: 34  CDERPGPCVKPPCRTILACLPVE-----ANGCARMECSAPKVCVERV-RPCIGRSCKEIA 87

Query: 448 LCDEPSILYNINLYY 492
            C+ P+  + +++YY
Sbjct: 88  TCETPNSTFPLSVYY 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,287,863
Number of Sequences: 27780
Number of extensions: 249939
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)