Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c06f
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   6.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 59  INIVYIPYPINESTKIIGQCTSNENGTK*RLYNFESFV 172
           I++ Y P+         G  T N +     LYN ++FV
Sbjct: 153 IDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFV 190


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 129 SFDVHCPIIFVDSFIGY 79
           S++VH P+   D++IG+
Sbjct: 52  SWEVHDPVTNSDTYIGF 68


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 259 THICEKQPRRCSKRPIL 309
           +H+C   PR  SK P+L
Sbjct: 44  SHLCLPAPRINSKSPLL 60


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 259 THICEKQPRRCSKRPIL 309
           +H+C   PR  SK P+L
Sbjct: 44  SHLCLPAPRINSKSPLL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,353
Number of Sequences: 438
Number of extensions: 3174
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)