Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c05r
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    35   0.014
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   6.7  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   6.7  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   8.9  
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
 Frame = -3

Query: 733  LRLCKKDLAIKRN-KNKNKGLKIVRQLQEANKYRMAAFACDSSINNSAPENDLINQRQIA 557
            L   K++   KRN ++K K   +  +    N+ + A    +   +N   E+D+  ++ + 
Sbjct: 808  LEQLKQEYLTKRNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDN---EDDIDRKQGLF 864

Query: 556  HLEHRRELPPQDIAQQRQPAVKKIKRNTLSMHVLDISTVLNENTLNYVSWLCPRL 392
             L    ++P  +I QQ +  V+ +  +T+ MH   I  + N N  N  + L P +
Sbjct: 865  SLAKANKIP--EIRQQERRQVQLLSNSTIKMHPSQIRMMTNRNVANVKARLFPSM 917


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -3

Query: 505 QPAVKKIKRNTLSMHVLDISTV--LNENTLNYVSWLCPRLGEMN----GAPEELVMYSLV 344
           +P + K+    L++  ++ S +  L  N L Y+S  CP L  +N    G  E+  M  ++
Sbjct: 109 EPLIGKLLYQNLNLVTINFSNIFSLPANILEYISDNCPNLKALNIGNCGLVEDTGMVQII 168

Query: 343 K 341
           K
Sbjct: 169 K 169


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 TPPNIISSPFPFTNEYITSSS 371
           TPP   S P  FT  +ITSSS
Sbjct: 691 TPPPTTSFPSTFTTSFITSSS 711


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 394 LGEMNGAPEELVMYSLVKGN 335
           +G +NG PEE ++Y+  +GN
Sbjct: 236 IGWVNGQPEEKILYTAGEGN 255


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 691 NKNKGLKIVRQLQEANKYRMAAFACDSSINNSAPENDLINQRQ 563
           N ++GLK + QL ++ K    AF C    N  A   +++   Q
Sbjct: 707 NNHEGLKELSQLTKSTKINNTAFICSWLTNQPAECVNILTSTQ 749


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 56  LKLSKLKLRDKFN*SNYTCFINLLIIDAQFSNTYKKGQ 169
           +++S+       N  ++T F N+L +D  F   Y +GQ
Sbjct: 124 IEISQSSPSPSLNPESWTNFANMLWLDQPFGTGYSQGQ 161


>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -3

Query: 622 ACDSSINNSAPEND---LINQRQIAHLEHRRELPPQDIAQQRQPAVKKIKRNTLSMHVLD 452
           A   S+N  A EN+   +IN  +   L+   +L  +++ + +    ++ ++NTL    L 
Sbjct: 47  ASSDSLNTIASENNDENVINLEEFRQLKRNCDLYQRNLQKLQLLFKQQSQKNTLLEKQLS 106

Query: 451 ISTVLNE 431
           + T LN+
Sbjct: 107 LQTELNQ 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,988
Number of Sequences: 5004
Number of extensions: 60429
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)