Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c05r
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857...    31   1.3  
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    31   1.3  
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000     29   4.0  

>05_04_0356 -
           20584212-20584628,20584798-20584899,20585658-20585705,
           20586046-20586186,20586315-20586437,20587166-20587252,
           20587630-20587742,20587844-20587943,20588217-20588601,
           20588841-20588917,20589501-20589593,20589697-20589774,
           20590923-20591246
          Length = 695

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 685 NKGLKIVRQLQEANKYRMAAFACDSSINNSAPENDLINQRQ--IAHLEHRREL 533
           N  + + R+L +  K ++A  A  S+     PE++LIN+    + HL HRR L
Sbjct: 366 NCQVAVKRRLPQEVKQKLAKVARLSANQGKIPEHELINRLMGIVGHLVHRRTL 418


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 619 CDSSINNSAPENDLINQRQIAHLEHRRELP 530
           C    NNS P   L+ + Q+  LEHRR  P
Sbjct: 13  CRPRRNNSCPTKTLVGKDQLKELEHRRPSP 42


>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
          Length = 461

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 607 INNSAPENDLINQRQIAHLEHRRELPPQDIAQQRQPA 497
           IN + P  + +   Q+ HL + ++ PP    QQ+QPA
Sbjct: 216 INQNYPLLNQMQGLQLLHLANHQQAPPPQQQQQQQPA 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,296
Number of Sequences: 37544
Number of extensions: 324792
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)