Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c05r
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)                      29   5.4  
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             29   5.4  
SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               28   9.5  

>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 697 NKNKNKGLKIVRQLQEANKYRMAAFACD-SSINNSAPENDLINQRQIAHLEHRRELPPQD 521
           +   N    I+R + E+   R++  +CD ++ N++AP+     ++     E + +  PQ 
Sbjct: 211 HSKSNHPQSIIRNIPESINRRLSEISCDENTFNDAAPQYQEALRKSGYEYELKFQPTPQR 270

Query: 520 IAQQRQ 503
            + QRQ
Sbjct: 271 TSTQRQ 276


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
 Frame = -3

Query: 706 IKRNKNKNKGLKIVRQ--LQEANKYRMAAFACDSSINNSAPENDLIN------QRQIAHL 551
           +   K  +K  K+ +    Q A   R     CDS+ ++ APEN   +      +RQ A +
Sbjct: 175 VPSEKEPSKAQKVAKSNPTQPARSLRKRPHDCDSTTDSDAPENHKTSLAKRSPERQSARI 234

Query: 550 EHRRELPPQDIAQQRQ 503
             ++   P  I +  Q
Sbjct: 235 HRKQTTSPSHIPRSHQ 250


>SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 685 NKGLKIVRQLQEANKYRMAAFACD-SSINNSAPENDLINQRQIAHLEHRRELPPQDIAQQ 509
           N    I+R + E+   R++  +CD ++ N++AP+     ++     E + +  PQ  + Q
Sbjct: 4   NHPQSIIRNIPESINRRLSEISCDENTFNDAAPQYQEALRKSGYEYELKFQPTPQRTSTQ 63

Query: 508 RQ 503
           RQ
Sbjct: 64  RQ 65


>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 661 QLQEANKYRMAAFACDSSINNSAPENDLINQRQIAHLEHRRELPPQDIAQQRQPAVKKIK 482
           Q +EA K R    A +        E +   Q+Q+ HL  R +   Q+IAQ  +   K   
Sbjct: 353 QAEEAKK-REQIRAMEDQRKQEQSEKEKELQKQVEHLTTRLKFQEQEIAQAMEQRKKHTS 411

Query: 481 RNT 473
           +N+
Sbjct: 412 KNS 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,088,550
Number of Sequences: 59808
Number of extensions: 411609
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)