Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c05r
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-6|AAB03138.1|  137|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    28   8.3  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   8.3  

>U61947-6|AAB03138.1|  137|Caenorhabditis elegans Hypothetical
           protein C06G3.8 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 116 INLLIIDAQFSNTYKKGQFYKNNVQIKLLYYGSLNYVSWRSNEM*RVRIHILMF 277
           IN  I++ +F+ T+K G   K       +Y G L     +S E  +V   +++F
Sbjct: 49  INASIMNPEFNETFKPGDILKFRGAYTSIYQGGLTLSVGKSGECKKVGEFMMVF 102


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 730  RLCKKDLAIKRNKNKNKGLKIVRQLQEANKYR 635
            RL +K+   K  +N NKG+ + +++ EA +YR
Sbjct: 1374 RLGEKEAIKKVLQNSNKGINVEKKMIEATEYR 1405


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 730  RLCKKDLAIKRNKNKNKGLKIVRQLQEANKYR 635
            RL +K+   K  +N NKG+ + +++ EA +YR
Sbjct: 6220 RLGEKEAIKKVLQNSNKGINVEKKMIEATEYR 6251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,349
Number of Sequences: 27780
Number of extensions: 331495
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)