Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c05r
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43060.1 68415.m05343 expressed protein similar to cDNA bHLH ...    30   1.9  
At5g27800.1 68418.m03333 expressed protein predicted protein, Ar...    29   3.4  
At2g46980.2 68415.m05869 expressed protein                             29   4.4  
At2g46980.1 68415.m05868 expressed protein                             29   4.4  
At1g76920.1 68414.m08954 F-box family protein (FBX3) contains si...    29   4.4  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   7.7  

>At2g43060.1 68415.m05343 expressed protein similar to cDNA bHLH
           transcription factor (bHLH zeta gene) GI:32563005
          Length = 156

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 622 ACDSSINNSAPENDLINQRQIAHLEHRRELPPQDIAQQRQPAVKKIKR 479
           + D  IN   PE D+     +  L + R+  P D   Q+   V+KIK+
Sbjct: 3   SADKLINTDVPEKDVFAFHFLQSLSNLRKQNPFDTPDQKNYRVRKIKK 50


>At5g27800.1 68418.m03333 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 342

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 379 GAPEELVMYSLVKGNGELIMFGGVHNDISILTF---SEHQ 269
           G  EEL+  ++V+GN E++  GG+  +  +  F   SEHQ
Sbjct: 30  GGNEELMCLTIVQGNQEVLSIGGLMKNNKLRFFGSISEHQ 69


>At2g46980.2 68415.m05869 expressed protein
          Length = 516

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 727 LCKKDLAIKRNKNKNKGLKIVRQLQEANKYRMAAFACDSSINNSAPE-NDLINQRQIAHL 551
           LCK+  ++  +K  NKGL    Q      ++       SS  +S  E N   N R +   
Sbjct: 103 LCKQTSSLSGSKGLNKGLNGAHQTPARESFQNCPI---SSPQHSLGELNGGRNDRVMDRS 159

Query: 550 EHRRELPPQDIAQQR 506
             R E PP  + QQ+
Sbjct: 160 PERMEEPPSAVLQQK 174


>At2g46980.1 68415.m05868 expressed protein
          Length = 516

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 727 LCKKDLAIKRNKNKNKGLKIVRQLQEANKYRMAAFACDSSINNSAPE-NDLINQRQIAHL 551
           LCK+  ++  +K  NKGL    Q      ++       SS  +S  E N   N R +   
Sbjct: 103 LCKQTSSLSGSKGLNKGLNGAHQTPARESFQNCPI---SSPQHSLGELNGGRNDRVMDRS 159

Query: 550 EHRRELPPQDIAQQR 506
             R E PP  + QQ+
Sbjct: 160 PERMEEPPSAVLQQK 174


>At1g76920.1 68414.m08954 F-box family protein (FBX3) contains
           similarity to stamina pistilloidia GI:4101570, the pea
           ortholog of Fim and UFO from [Pisum sativum]
          Length = 374

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 448 STVLNENTLNYVSWLCPRLGEMNGAPEELVMYSLVKGNGE--LIMFGGVHNDISI 290
           S  L   T+ + +W+C    E     + +    L++GNG+  L+M GG+ +  S+
Sbjct: 226 SCKLTNLTITHTNWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSL 280


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 473 CVSLNFFYSWLSLLGNVLWRKFPSMFQMSNLPLINEIIFWSRI---VYRRVTSKC 628
           CVSL+ FYS LSLL  + W      F    L L+   + W  I   ++ R T+ C
Sbjct: 68  CVSLSVFYSVLSLLSCLHWHTNGWPF----LDLLLAALTWGSISVYLFGRYTNSC 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,919
Number of Sequences: 28952
Number of extensions: 290230
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)