Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c05f
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 44 1e-05
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 39 6e-04
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 33 0.030
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 28 0.84
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 28 1.1
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 27 1.5
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 27 2.0
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 26 3.4
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 25 6.0
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 6.0
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 7.9
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 407 WKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
W + + P R HAA ++E +Y+FGG ++ T NDL+ F LS++ W
Sbjct: 280 WSKVETFGVAP--NPRAGHAASVVEGILYVFGGRASDGTFLNDLYAFRLSSKHW 331
Score = 34.7 bits (76), Expect = 0.010
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 407 WKNLSPTNMFPVITKRFSHAACILENS---MYIFGGCTTNSTSFNDLWKFDLSTRKW 568
W L+ V+ R+SHA+ + +YIFGG ++S NDLW +L+T ++
Sbjct: 66 WSKLTVRGSSNVLP-RYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQF 121
Score = 33.9 bits (74), Expect = 0.017
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 407 WKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
W+ S N P R H A + +YIFGG T + FNDLW + W
Sbjct: 230 WELASVVNDPP--PARAGHVAFTFSDKLYIFGG-TDGANFFNDLWCYHPKQSAW 280
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTS---FNDLWKFDLSTRKW 568
R HA+ ++ N+ +FGG T + + N L+ + S+ W
Sbjct: 134 RLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVW 175
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 407 WKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
W + FP R H A +++++YI+GG N+LW F+ S ++W
Sbjct: 285 WTEVRSIGRFP--GPREGHQATTIDDTVYIYGGRDNKGLILNELWAFNYSQQRW 336
Score = 32.7 bits (71), Expect = 0.039
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
R +H+ +++ +++ GG ++ +DLW FDL T W
Sbjct: 248 RSNHSVTLVQGKIFVHGG-HNDTGPLSDLWLFDLETLSW 285
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGC--TTNST---SFNDLWKFDLSTRKW 568
R H+ +++Y+FGGC T+ST N L+ ++ + +W
Sbjct: 113 RVGHSIVCSADTIYLFGGCDSETDSTFEVGDNSLYAYNFKSNQW 156
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 33.1 bits (72), Expect = 0.030
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKWV 571
R+ H C+L++ + IF G +++ ++ FDL + KWV
Sbjct: 164 RYGHLHCVLDHYLIIFCGQDLSNSYIEEINIFDLDSGKWV 203
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 233 TIEDLPDEVLEFILSFLPPYRDLENCGGVCRRW 331
T+ +LP E+L I SFL P R L + C+ W
Sbjct: 30 TVLNLPKEILIIIFSFLDP-RSLLSAQCTCKYW 61
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -1
Query: 534 SLNDVELVVHPPNMYILFS------SIHAACENRFVITGNIFVGERFFHKILNSPIAFT 376
++ DVE V+ P NMY++ + I +N F + GE ++++ I +T
Sbjct: 33 NVGDVETVIFPQNMYLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYT 91
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 264 SLF*VFCLPTET*RTVVVSVGDGMRVPK 347
+ F + LP ET V VGDG RVP+
Sbjct: 27 NFFQIISLPNETINQYHVIVGDGSRVPR 54
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/76 (19%), Positives = 31/76 (40%)
Frame = +2
Query: 200 HKSLQEQTLRSTIEDLPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVLHKTSIKLV 379
+ +L +R+T+ DE+ ++ +P + RW ++ SI +
Sbjct: 358 YPTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFHDSASEAIRWMVNKGQLVRSGSIYQI 417
Query: 380 KAIGEFKILWKNLSPT 427
+ E+ L +L PT
Sbjct: 418 ATVEEYPHLQPSLLPT 433
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 353 LHKTSIKLVKAIGEFKILWKNLSPTNMFPVIT 448
LHK +I + + ++KI+ N S N PV T
Sbjct: 240 LHKLNIPVSPTVSDYKIMADNHSLYNTLPVAT 271
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 97 HQCHYHRFSEYPEHSFNFVNTKQKFVVFC 183
H C++ YP H FV K FC
Sbjct: 4 HTCYFCSGPVYPGHGIMFVRNDSKVFRFC 32
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 265 VYFKFFASLQRLRELWWCL*EMVCVCPKC 351
V FK S RE+ W L + CVC C
Sbjct: 403 VSFKLPTSCSYCREIIWGLSKRGCVCKNC 431
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 479 ENSMYIFGGCTTNSTSFNDLWKFDLSTRKWV 571
EN +YIFGG + + D+ L TR+ V
Sbjct: 450 ENKLYIFGGQSYDQEFILDMCYIKLETREAV 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,498
Number of Sequences: 5004
Number of extensions: 56158
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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