Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c05f
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 8e-20
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 40 0.002
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34) 38 0.006
SB_30626| Best HMM Match : Kelch_1 (HMM E-Value=1e-17) 38 0.006
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_37532| Best HMM Match : Kelch_1 (HMM E-Value=1.8e-09) 35 0.054
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023) 33 0.13
SB_33725| Best HMM Match : Kelch_1 (HMM E-Value=3.59994e-42) 33 0.13
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_36705| Best HMM Match : RRF (HMM E-Value=0.26) 32 0.29
SB_5543| Best HMM Match : Kelch_1 (HMM E-Value=1.4e-06) 32 0.29
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11) 32 0.38
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 31 0.51
SB_43498| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 31 0.88
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 31 0.88
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 30 1.2
SB_25767| Best HMM Match : F-box (HMM E-Value=9.7e-09) 30 1.2
SB_36614| Best HMM Match : Kelch_1 (HMM E-Value=0) 30 1.5
SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0) 30 1.5
SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0) 30 1.5
SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 2.0
SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 2.7
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12) 29 3.6
SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38) 28 4.7
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6) 28 6.2
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25) 28 6.2
SB_3364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42) 28 6.2
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 27 8.2
SB_42529| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-23) 27 8.2
SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 93.9 bits (223), Expect = 8e-20
Identities = 45/121 (37%), Positives = 68/121 (56%)
Frame = +2
Query: 206 SLQEQTLRSTIEDLPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVLHKTSIKLVKA 385
S ++ S I LP E++E IL FL Y DLE VCR W ++ + + +
Sbjct: 7 SFEDGAWSSVISRLPAELIEKILMFLSSYGDLEQARLVCRVWNRLVSRIIQQRLRRFYEC 66
Query: 386 IGEFKILWKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRK 565
+ K+ +K + T+ F + RFSH C+ NSMYIFGGC+ ++T+FND+++ DL K
Sbjct: 67 VANGKLNFKVVPNTSRFAP-SPRFSHGCCVSRNSMYIFGGCSPSNTAFNDVFELDLKDHK 125
Query: 566 W 568
W
Sbjct: 126 W 126
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 449 KRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
+R HAACI+E+ M +FGG S FND+W DL+ +W
Sbjct: 202 ERAGHAACIVEDRMIVFGGAQRQS-RFNDVWVLDLNDMQW 240
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 191 EIIHKSLQEQTLRSTIEDLPDEVLEFILSFLPPYRDLENCGGVCRRWY-ACAQNVLHKT 364
++IH ++E +DLPD +L FI FL P +++ G VCR+W+ A VL K+
Sbjct: 11 QVIHLPIRELN-HGFWQDLPDSLLLFIFGFLTP-KEVLTAGEVCRKWHRASMDEVLWKS 67
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
R SH + ++S+ +FGG T S N+LW+F+L++R W
Sbjct: 192 RHSHTVSLYKDSLLVFGGDTGTGLS-NELWQFNLTSRLW 229
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 404 LWKNLS---PTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLS 556
LW L+ P PV+ H A I+ + +Y++GG T N++ + ++ + LS
Sbjct: 228 LWAQLAVSDPNTPPPVV----DHTANIVGDKLYVYGGRTANTSFSSAMFMYSLS 277
>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
Length = 405
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 389 GEFKILWKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTS--FNDLWKFDLSTR 562
G+ + K ++P N P R H + ++Y+FGG + + + F +LW+F+++++
Sbjct: 5 GKTNEIAKTINPRNTSPSPLPRSGHRCVADDRNVYVFGGYSPHYSEKLFRELWRFNIASQ 64
Query: 563 KW 568
W
Sbjct: 65 CW 66
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 449 KRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
+R H + ++++YI GG T +ND+W DL +W
Sbjct: 279 RRRCHGCVLYKDAVYICGGYD-GQTIYNDVWSLDLVRFQW 317
>SB_30626| Best HMM Match : Kelch_1 (HMM E-Value=1e-17)
Length = 341
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 446 TKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKWV 571
+KR H ++ +Y+FGG T + + ND+ +FD S W+
Sbjct: 14 SKRAFHTCSSVQGFLYVFGGITDDRSVLNDMHRFDPSNNSWL 55
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 413 NLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLS 556
N PT P++++RF H A + ++M+I GG N T ND+ + ++
Sbjct: 668 NKMPTKDLPILSERFGHTAIQINSTMFIVGG--FNGTMLNDVLSYTVN 713
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDL 538
R SH+ +L + ++++GG + ST FNDL
Sbjct: 382 RASHSTVVLGDWIWVYGGYSLISTQFNDL 410
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFND 535
RF H+A ++ + M ++GG T N T +D
Sbjct: 620 RFFHSAVLIGHMMLVYGGNTHNMTVASD 647
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 386 IGEFKILWKNLSP--TNMFPVI--TKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDL 553
I +F ++ N S TN V+ T R+ H A I M +FGG T S N++W L
Sbjct: 449 IMKFDLVTMNWSQVVTNQLAVVMPTPRYFHCAVIHAGVMVVFGGLTEQGVS-NEVWHLSL 507
Query: 554 STRKW 568
S W
Sbjct: 508 SPPSW 512
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 389 GEFKILWKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
G++++L L+ N R +H+ S+++FGG + D+ KFDL T W
Sbjct: 401 GQWELL-SELTSRNRSTSSLVRMAHSLVTSGQSLWVFGGYSMAYGPLGDIMKFDLVTMNW 459
>SB_37532| Best HMM Match : Kelch_1 (HMM E-Value=1.8e-09)
Length = 118
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 401 ILWKNLSPTNMFPVITKRFSHAACIL-ENSMYIFGGCTTNS---TSFNDLWKFDLSTRKW 568
++W ++ P R H C + +Y+FGG ++ + FND++KF+LS KW
Sbjct: 3 LIWHYINAQGHLPF--PRSLHTICAYHDKDIYLFGGTNDSAKGRSPFNDVFKFNLSKSKW 60
>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
Length = 1169
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWKFDL 553
R SH+A + + ++IFGG + N+LWK+D+
Sbjct: 695 RKSHSAVVCGDCLFIFGGYIDIRGATNELWKYDI 728
>SB_33725| Best HMM Match : Kelch_1 (HMM E-Value=3.59994e-42)
Length = 635
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 386 IGEFKILWKNLSPTNMFPVIT--KRFSHAACILENS--MYIFGGCTTNSTSFNDLWKFDL 553
+G K +++ N + IT H AC++ ++ +Y+ GG N+ + WK+D
Sbjct: 388 LGRSKSMYRYTPAKNTWEYITGAPEELHGACVVADTSNIYVIGGLDQNNMVTSSCWKYDP 447
Query: 554 STRKW 568
+W
Sbjct: 448 EVERW 452
>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 446 TKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLS 556
T R H++C+L++ + IFGG T +ND++ D++
Sbjct: 598 TPRSGHSSCLLDSKLVIFGGWDA-PTCYNDMFLLDMT 633
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 245 LPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVLHKTSIKLVK 382
LPDE++ I S L ++DL C VC+++Y A + SI L+K
Sbjct: 2708 LPDEIVLKIFSSLS-HKDLATCALVCQQFYRIAMDETLWGSITLIK 2752
>SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)
Length = 397
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 331 VCVCPKCSTQNLYKTCKSNWRI*NFVEKPFSNKYVSCYNKTIFTCSMYT 477
+ +C C NL + K +W + + VE PF N+++S T F +YT
Sbjct: 12 IFICFTCIFLNLEQVFKDSWVL-SVVELPFGNRHLSFALTTSFEIGVYT 59
>SB_5543| Best HMM Match : Kelch_1 (HMM E-Value=1.4e-06)
Length = 260
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWKFD 550
R+ H+A I+++++YIFGG + + N L+ FD
Sbjct: 24 RYGHSASIVDDTVYIFGGRSDVQGACNTLYCFD 56
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWK 544
R H AC++ +YIFGG + W+
Sbjct: 94 RDGHTACVIGKKIYIFGGYEEEGSQSPASWR 124
>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
Length = 376
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 218 QTLRSTIEDLPDEVLEFILSFLPPYRDLENCGGVCRRW 331
+T + D+PD VL ILS L +D + VCRRW
Sbjct: 63 KTFNTVFSDIPDTVLLLILSHLNT-QDRAHASMVCRRW 99
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 437 PVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFD 550
P+ KR +H A +L ++Y GCT ++ S + + D
Sbjct: 366 PLTQKRKAHCAVVLHGNLYAISGCTYDNDSLASVERLD 403
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 185 KMEIIHKSLQEQTLRSTIEDLPDEVLEFILSFLPPYRDLENCGGVCRRW 331
++EII ++Q + +IE LPD VL + SFL R L VC+RW
Sbjct: 10 EVEIISNDSKKQE-KPSIERLPDSVLLQVFSFL-CQRSLCKLALVCKRW 56
>SB_43498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 407 WKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLW 541
W L+PT P R +HAA + + +Y+FGG + +D +
Sbjct: 179 WTKLNPTGDVP--PSRTAHAAVAIGHRLYLFGGMNGLGMALDDFY 221
>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 215 EQTLRSTIEDLPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQN 349
+ T + I +LP E+L I S+L P +DL VC+ W A++
Sbjct: 105 KSTQVTLIHNLPPEILNKIFSYLNP-KDLCRTSQVCKSWSVFAKD 148
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 245 LPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVL 355
LP EV+ +I SFL P D+++ VC W + + L
Sbjct: 19 LPQEVVSYIFSFL-PLADIKSSARVCHLWAKASDDPL 54
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 224 LRSTIEDL-PDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVL 355
++S + DL P+EV+ ILS++P + + V ++WYA A+N L
Sbjct: 77 VQSNVFDLLPEEVILEILSYIPLKQLYTSIPFVSKQWYANAKNPL 121
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +2
Query: 245 LPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVLHKTSIKLVKAIGEFKILWKNLSP 424
+ D+V+ + FL R+L + VCRRWY Q+ T + L + + + +
Sbjct: 564 IADDVIIAVFRFLD-MRNLLSASLVCRRWYRLTQDSSLWTDLDLAQYSTKLQPAAIHRLL 622
Query: 425 TNMFPVITKRFSHAACILENSMYI 496
+ F + +R S A C + + +
Sbjct: 623 SQSFAPLGRRLSLATCAVNSETLV 646
>SB_25767| Best HMM Match : F-box (HMM E-Value=9.7e-09)
Length = 250
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 236 IEDLPDEVLEFILSFLPPYRDLENCGGVCRRWYACAQNVLHK 361
+EDLPDE++ IL +L P L R W LH+
Sbjct: 1 MEDLPDEIVTSILDYLDPLAKLRLARVNKRFWQIATDPFLHR 42
>SB_36614| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 178
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 419 SPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
S T++ P+ +R A + ++SMY+ GG N T + ++ S+ +W
Sbjct: 43 SSTDVQPMRDRRSFPCAVVCDDSMYVMGGYDGNDT-LRSVEMYNFSSNQW 91
>SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 590
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 419 SPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
S T++ P+ +R A + ++SMY+ GG N T + ++ S+ +W
Sbjct: 455 SSTDVQPMRDRRSFPCAVVCDDSMYVMGGYDGNDT-LRSVEMYNFSSNQW 503
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 446 TKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
T+R H ++ S+Y+ GG +T+ N + + + T +W
Sbjct: 368 TRRSKHGMVEVDGSIYVIGG-FDGTTTVNTVESYSVQTNRW 407
>SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 456
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 425 TNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
T + + T R+S +L +Y GG + N + +D ST +W
Sbjct: 317 TEISSMTTARWSLGVAVLGEKLYAIGGSDNRESHSNSVEVYDPSTNEW 364
>SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 571
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 413 NLSPT-NMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
NLS ++ P+IT R +H + + +++ GG + T+ +D + W
Sbjct: 296 NLSECYDLAPMITARKNHGMTLHDGGIFVVGGASMEETALRSAELYDPRSNSW 348
>SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 437 PVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
P+ T+R L N +Y+ GG + FDL KW
Sbjct: 488 PMKTRRIFANVSFLRNKLYVLGGYANVFERISSCEMFDLDKNKW 531
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 523 CRISCASPKYVHTIFKYTCCM*KSFCYNRKHICW 422
CR+ C S + V + CC + CY+ + +C+
Sbjct: 195 CRVVCYSCRVVFCSCRVACCSCRVVCYSCRVVCY 228
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 523 CRISCASPKYVHTIFKYTCCM*KSFCYNRKHIC 425
CR++C S + V + CC + CY+ + C
Sbjct: 230 CRVACCSCRVVCYSCRVACCSCRVVCYSCRVAC 262
>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
Length = 433
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 233 TIEDLPDEVLEFILSFLPPYRDLENCGGVCRRW 331
++++LP L +LS+L RDL C VCRR+
Sbjct: 13 SLDNLPTIPLASVLSYLNA-RDLARCSRVCRRF 44
>SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)
Length = 518
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 407 WKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
W+++ P N RF H N +Y GGC ++ + +DL + W
Sbjct: 428 WESIPPMNHV-----RFRHELASAGNHVYAIGGCDKVGSAHKTVEVYDLKSCTW 476
>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
Length = 491
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 341 AQNVLHKTS--IKLVKAIGEFKILWKNLSPTNMFPVITKR 454
+ NV+ ++S LVKA + LWK SP + +P TKR
Sbjct: 245 SSNVISESSQPAPLVKADVKVTELWKEASPLSSYPENTKR 284
>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
Length = 614
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 498 NMYILFSSIHAA-CENRF--VITGNIFVGERFFH 406
N+++ IH CE V+TGN+FV + FFH
Sbjct: 282 NVWLTDFQIHGEWCERHLQTVVTGNVFVYDCFFH 315
>SB_3364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 326 RWYACAQNVLHKTSIKLVKAIGEFKILWKNLSPTNMFPV-ITKRFSHAAC 472
RWYA +K + G ++W + S T +F + ITK S C
Sbjct: 109 RWYAVVMPTKYKAKFGRRRIYGYIGLIWLSASITEIFELFITKLGSDGRC 158
>SB_47599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +2
Query: 353 LHKTSIKLVKAIGEFKILWKNLSPTNMFPVITKRFSHAACILENSMYIFGGCTTNSTSFN 532
++ S+ LV+A + W L +KR A ++ + + GG T++ + +
Sbjct: 171 IYGRSLNLVEAFNVKENKWITLPSMR-----SKRRRCAVAGFDDKIIVSGGLTSDGITLD 225
Query: 533 DLWKFDLSTRKWV 571
+ FD+ RKW+
Sbjct: 226 TMELFDMRNRKWL 238
>SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42)
Length = 559
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
R++H A L ++Y+ GG + + + K+ T +W
Sbjct: 440 RYAHCAVALHGNIYVMGGQSGSGNILRSVEKYSPRTGEW 478
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 452 RFSHAACILENSMYIFGGCTTNS--TSFNDLWKFDLSTRKW 568
R+ AA IL+ +YIFGG T++ + +D ST W
Sbjct: 390 RYFAAAAILDGIIYIFGGKTSDRFYNVTETVVSYDPSTNTW 430
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 82 SYFN*NMCFCLLIAWLCIAIYHYNCGY 2
SYF+ +C ++ C I+ YNC +
Sbjct: 312 SYFSVTLCIYYILLVFCAVIFVYNCAW 338
>SB_42529| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-23)
Length = 299
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = -1
Query: 126 LGKPMIMTLMVYSISVISIEICVFVCL 46
LG + ++++ +I +++I +CVFVC+
Sbjct: 6 LGVIIPLSILAVAIVILNIAVCVFVCI 32
>SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 398 KILWKNLSPTN-MFPVITKRFSHAACILENSMYIFGGCTTNSTSFNDLWKFDLSTRKW 568
K+ W L P++ P + S + + IFGG + + D W FDL+++ W
Sbjct: 4 KLRWVELKPSSSQVPSARRDSSIGYDPNTDRVVIFGG--RSDATLGDTWIFDLTSKTW 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,822
Number of Sequences: 59808
Number of extensions: 390633
Number of successful extensions: 1101
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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