Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04r
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    30   0.29 
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   6.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   6.1  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   6.1  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   6.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.1  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   8.1  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 26/128 (20%), Positives = 59/128 (46%)
 Frame = -3

Query: 507 ISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATIF 328
           ++DI+S++  +  LAL  +++V + +     + P    +D   P +  +A    G A ++
Sbjct: 93  LNDIYSSNPMIRSLALRTLTSVNIKNFWVAAMDPIVRLLDDTDPYVRKTAAI--GIAKLY 150

Query: 327 GRELAVASSGSLVVEDIRLVSTVSLRLLPSINVRELSAVLTVGNVESALKVVLFGNDVSE 148
             +  +  S  L+     ++S  S      +    L+A++ + N  +  K+  F  ++S 
Sbjct: 151 SYDKKMVESSGLIDHLKEMLSDES----SVVVANSLAALMNIVNSSTGFKLT-FSREISN 205

Query: 147 KLNDALNN 124
           KL  +L +
Sbjct: 206 KLVKSLTD 213


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 324 RELAVASSGSLVVEDIRLVSTVSLRLLPSI 235
           RELA+++ GS     I L S VSL L PS+
Sbjct: 352 RELAISTVGSSDSSGIFLASLVSLFLEPSL 381


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
 Frame = +1

Query: 349 DGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALE-SQFGYCARCAEDVRNWESVIA 525
           DG  +  E  E  VDA  S      +++ D  VADA++ +   +  +  +    WE    
Sbjct: 75  DGAKKNNESFENPVDASFSGGWCKAAEITDSLVADAIQHAPSAHLPKILKLCDIWEKAST 134

Query: 526 FGFFDVDWVKSTFLDTRSDAVDGVHDQFFDQILAFSVKVNF*GHSNDAGSES 681
           F    ++ ++S       DA+        D   A S   N  G+    GS++
Sbjct: 135 FPPEKLESLRSKL----KDAMASTEPVSVDSAAAPSQSTNPEGNGGSVGSQA 182


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 466 QFGYCARCAEDVRNWESVIAFGFFDVDWVKSTFLDTRSDAVDG 594
           +F YC      +RN    I    FD  W+   F +   + +DG
Sbjct: 60  RFMYCGGTWNGIRNHLDYIQGMGFDAIWISPIFENVEGNDIDG 102


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = +1

Query: 64  NTLNDLPDLLVVSF-----EEFGKSVVQSVIQLFGYVVAEENNFESGLNIANSKN 213
           NTL+D  D LV++F     +      +++++Q+F  V AEE++ E   +I ++K+
Sbjct: 163 NTLSDNFDRLVLNFCRNIFQLVKSGHIKTIVQIFKIVEAEESSDEVLKSIRDAKS 217


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 578  LLVSKNVDLTQSTSKKPKAITLSQFLTSS 492
            LL+ KN+ +T+   K+P A  L +F+ +S
Sbjct: 1435 LLIQKNLIVTKWDVKRPAAAALLEFVNTS 1463


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
 Frame = -3

Query: 603 IVNTINRITSGIQERGLDPIYVEK-AEGDYTFPISDIFSASGTV-AELALEGISNVVVND 430
           +V+  + I + I+  G  P+YVEK         +  + S  G V A    E I    V  
Sbjct: 157 VVHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVYAYPTTETIQKDNVCH 216

Query: 429 VTFNLLRPTTFSIDLALPKLSASAVAVNGQATIFGRELAVASSGSLVV 286
           + +   R   FSI      L+  AV     A I+G E+ V   G  ++
Sbjct: 217 LVYAPAR-LPFSIQQRAQTLAMDAVRTFEGAGIYGVEMFVLQDGETIL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,736
Number of Sequences: 5004
Number of extensions: 48203
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)