Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c04r
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 34 0.13
05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839,403... 31 0.91
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 31 1.2
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 30 2.1
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818... 29 3.7
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 3.7
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 28 6.4
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395... 28 6.4
11_01_0704 - 5793112-5793309 28 8.5
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 28 8.5
05_07_0353 + 29497953-29499110 28 8.5
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -3
Query: 603 IVNTINRITSGIQ-ERGLDPIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDV 427
++ + I+ I +RGL V+K G YT +S ++ T+ ++ ++ SN+
Sbjct: 61 VIKAVKNISMQIGGDRGLTSTAVKKG-GLYTLDVSSVYKYKSTLVDVKVDTESNISTTLT 119
Query: 426 TFNLLRPTTFSIDLALPKLSASAV 355
F++L T + LP ++ V
Sbjct: 120 VFDVLPSTKLVTSVKLPDYNSGKV 143
>05_01_0484 -
4033169-4033867,4033988-4034051,4035720-4035839,
4036631-4036827,4037000-4037170,4037292-4037432,
4037519-4037602,4037852-4037989,4038111-4038136,
4038292-4038346,4039094-4039198,4039303-4039371,
4040038-4040112
Length = 647
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 304 TGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCA 483
+G+ FP G + V+ ++ GAE+GEG KV+ D +++ + + + +
Sbjct: 9 SGFEAFPPLPGKVFVE-EAIGAEYGEGFETFRMDGPLKVDVDYLNEKLQECFLQRIRHAM 67
Query: 484 RCAED---VRNWESVIA 525
+ E + +W++VIA
Sbjct: 68 KPDEACGLIFSWDNVIA 84
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = -3
Query: 591 INRITSGIQERGLDPIYVEKAEGDYTFPISDIFSAS 484
+ RI+ I+ERG++ + E+ +G Y+ + ++ ++S
Sbjct: 1346 VQRISHAIRERGMNNVLAERIQGKYSVALGNLMASS 1381
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 487 CAEDVRNWESVIAFGFFDVDWVKSTFLDTRSDAVDGVHDQF 609
C V N + FG F W S L+TR +DGV DQ+
Sbjct: 63 CVPGVPNHLTYADFGRFCASWA-SHILETRIIRIDGVEDQY 102
>09_04_0461 +
17781413-17781474,17781576-17781629,17781729-17781839,
17781921-17781991,17782256-17782449,17783019-17783096
Length = 189
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 198 NVESALKVVLFGNDVSEKLNDALNNRLPE 112
NVE+AL+VV +V+EKL + N LPE
Sbjct: 105 NVETALEVVEHAAEVTEKLAANVANALPE 133
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +1
Query: 256 ADSGDQTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVI 435
+++GD+++ D+AS D ++ +S G E S S K +S +
Sbjct: 909 SENGDKSDGSTDEASVNKTESQVTGD----MNNESSGKSINPSSYQPENSISGKGDSIMS 964
Query: 436 DDNVADALESQFGYCARCAEDVRNWESVIAFGFFDVDWVK 555
+D + + S + E + N+E I + D D K
Sbjct: 965 EDRMIGEINSNLSIISSAKEKIGNYERNIIENYVDADVAK 1004
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +1
Query: 274 TNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEF--GEGKVDAECSWSQKVESDVIDDN- 444
+N FD + G Q PA+ + D RG+ F G+G + + + +D D
Sbjct: 1284 SNPFDSDSDDGGREQRPARASSVPPPADQRGSLFGGGDGFSASSAAARSRYRNDFRDTGG 1343
Query: 445 -VADALESQFGYCARCAED 498
A +++ GY A AE+
Sbjct: 1344 VEAQSVQELEGYAAYKAEE 1362
>02_01_0541 -
3950336-3950353,3950660-3951061,3951174-3951431,
3951554-3951754,3951861-3952203,3952286-3952344,
3952757-3953082,3953283-3953745,3954180-3954794,
3955600-3955896
Length = 993
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 545 IGSSPRSWIPEVMRLMVFTISFSI 616
+G+ P SW+ E VF++ FSI
Sbjct: 593 LGAYPNSWVDETSNCFVFSLMFSI 616
>11_01_0704 - 5793112-5793309
Length = 65
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 1 RNLDDTH*GGCLQNIVDDEEDNTL-NDLPDLLVVSF 105
R+L+D H L +VD EED + +DL D L V F
Sbjct: 29 RDLEDLHKAMALDWVVDKEEDEEITDDLLDALSVFF 64
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 645 VDLDRESQNLIEKLIVNTINR-ITSGIQERGLDPIYVE 535
VD+DR++ N E+L+ ++N T+ + L P++VE
Sbjct: 464 VDIDRDTYNKAEELLSLSLNEWATTLVASSSLHPVWVE 501
>05_07_0353 + 29497953-29499110
Length = 385
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 278 ISSTTRLPLLATANSLPKMVA*PLTATAEA 367
+S+TTRLPL+A S VA ATAEA
Sbjct: 6 MSTTTRLPLVAALLSAAACVAAAQPATAEA 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,179,569
Number of Sequences: 37544
Number of extensions: 322763
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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