Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c04r
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 43 3e-04
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 33 0.17
SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2) 31 0.93
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 31 1.2
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 31 1.2
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 29 4.9
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 28 8.6
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 28 8.6
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39) 28 8.6
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 42.7 bits (96), Expect = 3e-04
Identities = 43/135 (31%), Positives = 63/135 (46%)
Frame = +2
Query: 137 SFSFSDTSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATA 316
+F+ S LP+ ++L+A S PT + S ++L SN K + T STT L L +
Sbjct: 116 AFTTSLMFLPRTSSLKASSNTPTALSTTSLMSLPSTSNLKASSNTPTALSTTSLMSLPST 175
Query: 317 NSLPKMVA*PLTATAEALSLGRARSMLNVVGLKRLKVTSLTTTLLMPSRANSATVPDALK 496
SL + T ALS A S++++ L+ +S T T L + S +LK
Sbjct: 176 PSLEAS-----SNTPTALS---ATSLMSLPSTSSLEASSNTPTALSATSLMSLPSTSSLK 227
Query: 497 MSEIGKV*SPSAFST 541
S SPSA ST
Sbjct: 228 ASSN----SPSALST 238
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 158 SLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRL 298
SLP ++L A S PT +A S ++L S+ K + + STT L
Sbjct: 195 SLPSTSSLEASSNTPTALSATSLMSLPSTSSLKASSNSPSALSTTSL 241
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 33.5 bits (73), Expect = 0.17
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Frame = -3
Query: 378 PKLSASAVAVNGQATIFGRELAVASSGS-----LVVEDIRLVSTVSL---------RLLP 241
P + V++ GQAT+ +L V +G+ L+V R+ STV L +L+
Sbjct: 818 PARLKNRVSIKGQATLVIADLTVQDTGTYGCSLLLVTGKRIDSTVKLVVTGNDSTVKLVV 877
Query: 240 SINVRELSAVLTVGNVESALKVVLFGNDVSEKLNDALNNRLPELLETYNE 91
+ N + V+T GN +S +K+V+ GND + KL N+ +L+ T N+
Sbjct: 878 TGNDSTVKLVVT-GN-DSTVKIVVTGNDSTVKLVVTGNDSTVKLVVTGND 925
>SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)
Length = 277
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 225 ELSAVLTVGNVESALKVVLFGNDVSEKLNDALNNRLPELL 106
E ++ ++ LK +L ND+ +KL+DAL N E +
Sbjct: 48 EFKKLIWKDGIQEKLKEILVSNDMQQKLSDALKNNSTETM 87
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 ADSGD-QTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDV 432
AD G Q+ I D+ + G K G+ +G+ + EGK +E + K S +
Sbjct: 378 ADEGKTQSGIADEGKTQNGVVDEEKKQSGVVDEGERQSGIADEGKTQSEIADEGKTHSGI 437
Query: 433 IDD 441
+D+
Sbjct: 438 VDE 440
>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 576
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/92 (19%), Positives = 38/92 (41%)
Frame = -3
Query: 486 SGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATIFGRELAVA 307
+ TV A+ + V V FN + + + ++S V + AT+ + ++
Sbjct: 390 AATVVSKAISTVGLGVAATVVFNAISTVELGVAATVVSKASSTVELGVAATVVSKAISTV 449
Query: 306 SSGSLVVEDIRLVSTVSLRLLPSINVRELSAV 211
G + +STV L + ++ + +S V
Sbjct: 450 GLGVAATVVSKAISTVGLGMAATVVFKAISTV 481
>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 650
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 106 EEFGKSVVQSVIQLFGYVVAEENNFES-GLNIANSK 210
+E GK V V+ ++G+ + E N+FE +N N K
Sbjct: 359 KEHGKCTVIGVLDIYGFEIFETNSFEQLCINYCNEK 394
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/110 (24%), Positives = 42/110 (38%)
Frame = +2
Query: 38 KILLMMKRIIRSTISLICXXXXXXXXXXXXFKASFSFSDTSLPKRTTLRADSTLPTVRTA 217
+++ +KRI+RS + FSF+ KRT LRA S L R
Sbjct: 714 RVIAFIKRIVRSFVVSRSETRVAVVLYSERVYQRFSFT-RYFSKRTVLRAISQLRYRRGR 772
Query: 218 LSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKMVA*PLTATAEA 367
++ L + R+ RR R+ ++ T+ V P A A
Sbjct: 773 ITKTGRALLAARRFMFRGRRQCDRKRILIVITSGRSSDSVLRPAHALRRA 822
>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
Length = 929
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/87 (24%), Positives = 33/87 (37%)
Frame = +1
Query: 256 ADSGDQTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVI 435
+D D +N+ D + A DG DG S G + G D + + D +
Sbjct: 282 SDGDDVSNVASDGDDVSNV----ASDGDDVSDGSSDGDDVSNGSSDGDDVSDGSSDGDDV 337
Query: 436 DDNVADALESQFGYCARCAEDVRNWES 516
+ V+D + G +DV N S
Sbjct: 338 SNGVSDGDDVSDGDVVVTIDDVSNGAS 364
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 155 TSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKM 334
T LPK T +TLP A + TL ET + TT P T LPK
Sbjct: 2980 TPLPKTTAAPETTTLPKTTAAPETTTL---PKTTAAPETTTLPKTTAAPETTT---LPKT 3033
Query: 335 VA*P-LTATAEALS 373
A P TA E+ S
Sbjct: 3034 TAAPETTAVHESTS 3047
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 595 VHDQFFDQILAFSVKVNF*GHSNDAGSE 678
+ D+ FD +L FS + F H ND +E
Sbjct: 280 ISDEHFDNLLVFSAEAKFDLHGNDLTNE 307
>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
Length = 566
Score = 27.9 bits (59), Expect = 8.6
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +2
Query: 158 SLPKRTTLRADSTLPTVRTALSSLTL-MLGSNRKLTVETRRISSTTRLPLLATANSLPKM 334
SL K+ L L ++ L SLT +L +KL T+++ S T+ LL+ L +
Sbjct: 347 SLTKKL-LSLTKKLQSLTKKLLSLTKKLLSLTKKLLSLTKKLQSLTK-KLLSLTKKLLSL 404
Query: 335 VA*PLTATAEALSLGRARSML--NVVGLKRLKVTSLTTTLL 451
PL+ T + LSL + L ++ L + K SLT LL
Sbjct: 405 TKKPLSLTKKLLSLTKKLLSLTKKLLSLTK-KPLSLTKKLL 444
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,603,152
Number of Sequences: 59808
Number of extensions: 366198
Number of successful extensions: 1466
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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