Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04r
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.41 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 459  EGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATIFGRELAVASSGSLVVED 280
            EG+     +D T   L   T  I    P LSA+    NG  T + + + + S G +  +D
Sbjct: 1078 EGVPEQPPHDTTCTTLTSQTIRISWMSPPLSAA----NGVITGY-KVIVIPSGGGIYTKD 1132

Query: 279  IRLVST 262
             ++ S+
Sbjct: 1133 TKITSS 1138


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 492 SASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVA 352
           S +  V E+    ++N++  D        T +++DL+LP+L ++ +A
Sbjct: 493 SLNNAVGEMEATNVTNILSMD-------NTQYNLDLSLPQLDSTELA 532


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 12  RYTLRRLFTKYC 47
           R+TL + FT YC
Sbjct: 208 RFTLEKFFTDYC 219


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 12  RYTLRRLFTKYC 47
           R+TL + FT YC
Sbjct: 208 RFTLEKFFTDYC 219


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 459 EGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATI 331
           EG+S +V++  TFN L  +   I       S+S      +ATI
Sbjct: 310 EGVSCLVIDRETFNQLISSLDEIRTRYKDSSSSVEGWENRATI 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 459 EGISNVVVNDVTFNLLRPTTFSIDLALPKLSASA 358
           + +  + +N+   NL+RP TF+  + L ++   A
Sbjct: 617 DSVELLFINNNYINLVRPNTFTDKVNLTRVDMYA 650


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 372 LSASAVAVNGQATIFGRELA 313
           +S S +AVNG  T+F   L+
Sbjct: 261 MSLSPIAVNGYRTLFFHPLS 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,805
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)