Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04r
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29220.1 68417.m04180 phosphofructokinase family protein simi...    31   1.0  
At1g71520.1 68414.m08267 AP2 domain-containing transcription fac...    31   1.0  
At4g18030.1 68417.m02684 dehydration-responsive family protein s...    30   1.8  
At5g28800.1 68418.m03541 hypothetical protein predicted protein,...    29   2.3  
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    29   2.3  
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm...    28   5.3  
At1g74100.1 68414.m08582 sulfotransferase family protein similar...    28   5.3  
At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SD...    28   5.3  
At1g18590.1 68414.m02318 sulfotransferase family protein similar...    28   7.1  
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c...    27   9.3  
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c...    27   9.3  
At2g36810.1 68415.m04514 expressed protein                             27   9.3  

>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 473

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = -3

Query: 585 RITSGIQERGLDPIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRP 406
           +I   IQ+RG++ +Y+   +G      +          ++A+ GI   + ND+    +  
Sbjct: 172 KIVDSIQDRGINQVYIIGGDGSQKGAAAIFEEIRKRKLKVAVAGIPKTIDNDIP---IID 228

Query: 405 TTFSIDLALPKLSASAVAVNGQATIF 328
            +F  D A+ +   +  A + +AT F
Sbjct: 229 RSFGFDTAVEEAQRAINAAHVEATSF 254


>At1g71520.1 68414.m08267 AP2 domain-containing transcription
           factor, putative
          Length = 143

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 316 QFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALE 462
           Q  A D G+ VD    GA  G G  +   S +   E D +  +V D LE
Sbjct: 91  QKAASDAGMAVDAGFHGAVSGSGGCEERSSMANMEEEDKLSISVYDYLE 139


>At4g18030.1 68417.m02684 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 621

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 603 IVNTINRIT-SGIQERGLDPIYVEKAEGDYTFPIS-DIFSASG 481
           ++ TIN+ T S + ERGL  IY +  EG  T+P + D   ASG
Sbjct: 487 VIPTINKNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASG 529


>At5g28800.1 68418.m03541 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 118

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -3

Query: 648 KVDLDRESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYTFPISD-IFSASGTVA 472
           K+   R+ +N+I+K +V  ++  +S I +R      +E A  + +FP S+ +FS  G  A
Sbjct: 11  KMTKKRKKKNIIKKRMVKALHVSSSPIFDRNSSKPVIEFAVLEGSFPSSNHLFSGGGVAA 70

Query: 471 EL-ALEG 454
              ++EG
Sbjct: 71  SSHSIEG 77


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
            profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = -3

Query: 654  PSKVDLDRESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYTFPISDIFSASGTV 475
            P+KV L RES      L+ N +   TS  ++  ++ ++ ++   D   P SDI      +
Sbjct: 764  PAKVTLSRESIEFGIGLLQNDLKGSTSSKKDIVVENVFEKRLLSDVILP-SDIDVTFDDI 822

Query: 474  AELALEGISNVVVNDVTFNLLRPTTF 397
               ALE + +++   V   L RP  F
Sbjct: 823  G--ALEKVKDILKELVMLPLQRPELF 846


>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
           gamma-amino-N-butyrate transaminase / GABA transaminase
           / beta-alanine--oxoglutarate aminotransferase identical
           to gamma-aminobutyrate transaminase subunit precursor
           [Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
           contains Pfam profile PF00202: aminotransferase, class
           III; identical to cDNA gamma-aminobutyrate transaminase
           subunit precursor, nuclear gene for mitochondrial
           product GI:14030434
          Length = 504

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 630 ESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYTF 511
           E +N +     + +   T+G Q   LDP+ + K+EG Y +
Sbjct: 43  EKKNTVGSKGHDMLAPFTAGWQSADLDPLVIAKSEGSYVY 82


>At1g74100.1 68414.m08582 sulfotransferase family protein similar to
           SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
           (F4-ST) {Flaveria chloraefolia}; contains Pfam profile
           PF00685: Sulfotransferase domain
          Length = 338

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 264 WRPDEYLRRQGFHYW 308
           WRPDE L + G H+W
Sbjct: 38  WRPDEILTQYGGHWW 52


>At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SDR)
           family protein similar to stem secoisolariciresinol
           dehydrogenase GI:13752458 from [Forsythia x intermedia]
          Length = 285

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 352 GDSRG-AEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAEDVRNWESVIAF 528
           G+S+  A F  G V  E   S  V+  V +    D L +  G C     D+RN+ S+  F
Sbjct: 67  GESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNY-SLSEF 125

Query: 529 GF-FDVDWVKSTFLDTRSDA 585
              FDV+ VK  FL  +  A
Sbjct: 126 EMTFDVN-VKGAFLSMKHAA 144


>At1g18590.1 68414.m02318 sulfotransferase family protein similar to
           SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
           (F4-ST) {Flaveria chloraefolia}; contains Pfam profile
           PF00685: Sulfotransferase domain
          Length = 346

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 WRPDEYLRRQGFHYWLQPI 320
           WRP +     G H+WLQP+
Sbjct: 46  WRPKDPFVEYGGHWWLQPL 64


>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 166 EENNFESGLNIANSKNG 216
           E  NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153


>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 166 EENNFESGLNIANSKNG 216
           E  NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153


>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +2

Query: 185 ADSTLPTVRT---ALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKMVA*PLTA 355
           A+S+L  + T   AL++ T ++    KLT+ETR           + + SLPK V   LT+
Sbjct: 601 AESSLEVLHTQALALNACTTLVSVEPKLTIETRNRVMKILDQFFSISLSLPKAV---LTS 657

Query: 356 TAEALSLGRARSMLNVVGLKRLKVTSLTTTLLMPSRANSATVPDALKMSEIGKV*SPSAF 535
             ++    +A S L         V ++  +L+    + +A + D ++ S  G + + + F
Sbjct: 658 GLDSEDSYKALSSLE-------DVIAILKSLVAALHSCTAAICDKIRQSAEGAIQAVTEF 710

Query: 536 ST*IGS 553
            +  GS
Sbjct: 711 VSRRGS 716


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,084,956
Number of Sequences: 28952
Number of extensions: 258133
Number of successful extensions: 926
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)