Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04f
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.6  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   3.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   5.9  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   7.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 147 TPSTASLLVSKNVDLTQSTSKKPKAITLS 233
           TP+   LL    + LT S+  KP+A+ LS
Sbjct: 365 TPADLRLLTRGRLVLTVSSVSKPEALRLS 393


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 145 EHHQPHH 165
           +HHQPHH
Sbjct: 177 QHHQPHH 183


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 145 EHHQPHH 165
           +HHQPHH
Sbjct: 179 QHHQPHH 185


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 262 ARCAEDVRNWESVIAFGFFDVDW 194
           A   + V N+  V  F  FD+DW
Sbjct: 120 ATMVQSVLNFTDVWGFDGFDLDW 142


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 334 TNYIQHRPCPPQTQRLCCRRQRSGH 408
           T Y++H+  P  T    C  +  GH
Sbjct: 341 TQYVRHKNTPYHTPEPDCIHELLGH 365


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 479 TVSLRLLPSINVRELSAVLTVGNVES 556
           TVS   LPS ++ E++ V+   N+ S
Sbjct: 176 TVSANPLPSYDIPEINKVVDFINIMS 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,775
Number of Sequences: 336
Number of extensions: 2200
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)