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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04f
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    34   0.098
05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839,403...    31   0.69 
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    31   0.92 
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    30   1.6  
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    29   2.8  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    28   4.9  
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    28   4.9  
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337...    28   6.5  
05_07_0353 + 29497953-29499110                                         28   6.5  
12_02_0793 - 23200915-23202931,23203136-23203959                       27   8.5  
11_08_0006 - 27548581-27549177                                         27   8.5  
10_08_0479 - 18199310-18199348,18199938-18200255                       27   8.5  
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367...    27   8.5  

>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 140 IVNTINRITSGIQ-ERGLDPIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDV 316
           ++  +  I+  I  +RGL    V+K  G YT  +S ++    T+ ++ ++  SN+     
Sbjct: 61  VIKAVKNISMQIGGDRGLTSTAVKKG-GLYTLDVSSVYKYKSTLVDVKVDTESNISTTLT 119

Query: 317 TFNLLRPTTFSIDLALPKLSASAV 388
            F++L  T     + LP  ++  V
Sbjct: 120 VFDVLPSTKLVTSVKLPDYNSGKV 143


>05_01_0484 -
           4033169-4033867,4033988-4034051,4035720-4035839,
           4036631-4036827,4037000-4037170,4037292-4037432,
           4037519-4037602,4037852-4037989,4038111-4038136,
           4038292-4038346,4039094-4039198,4039303-4039371,
           4040038-4040112
          Length = 647

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -3

Query: 439 TGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCA 260
           +G+  FP   G + V+ ++ GAE+GEG          KV+ D +++ + +    +  +  
Sbjct: 9   SGFEAFPPLPGKVFVE-EAIGAEYGEGFETFRMDGPLKVDVDYLNEKLQECFLQRIRHAM 67

Query: 259 RCAED---VRNWESVIA 218
           +  E    + +W++VIA
Sbjct: 68  KPDEACGLIFSWDNVIA 84


>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +2

Query: 152  INRITSGIQERGLDPIYVEKAEGDYTFPISDIFSAS 259
            + RI+  I+ERG++ +  E+ +G Y+  + ++ ++S
Sbjct: 1346 VQRISHAIRERGMNNVLAERIQGKYSVALGNLMASS 1381


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 256 CAEDVRNWESVIAFGFFDVDWVKSTFLDTRSDAVDGVHDQF 134
           C   V N  +   FG F   W  S  L+TR   +DGV DQ+
Sbjct: 63  CVPGVPNHLTYADFGRFCASWA-SHILETRIIRIDGVEDQY 102


>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
            16033714-16033866,16034277-16034702,16035922-16037668,
            16037687-16038183,16038519-16038709,16038786-16038941,
            16040077-16040311,16040416-16040723,16041279-16041439,
            16041852-16041895,16041975-16042067
          Length = 1751

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/100 (22%), Positives = 41/100 (41%)
 Frame = -3

Query: 487  ADSGDQTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVI 308
            +++GD+++   D+AS          D    ++ +S G          E S S K +S + 
Sbjct: 909  SENGDKSDGSTDEASVNKTESQVTGD----MNNESSGKSINPSSYQPENSISGKGDSIMS 964

Query: 307  DDNVADALESQFGYCARCAEDVRNWESVIAFGFFDVDWVK 188
            +D +   + S     +   E + N+E  I   + D D  K
Sbjct: 965  EDRMIGEINSNLSIISSAKEKIGNYERNIIENYVDADVAK 1004


>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
            14050145-14050272,14050409-14050502,14050749-14051237,
            14052622-14052915,14053602-14053732,14053829-14055440,
            14055539-14055651,14055902-14056933,14057023-14057145,
            14057250-14057688
          Length = 1656

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -3

Query: 469  TNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEF--GEGKVDAECSWSQKVESDVIDDN- 299
            +N FD  +   G  Q PA+   +    D RG+ F  G+G   +  +   +  +D  D   
Sbjct: 1284 SNPFDSDSDDGGREQRPARASSVPPPADQRGSLFGGGDGFSASSAAARSRYRNDFRDTGG 1343

Query: 298  -VADALESQFGYCARCAED 245
              A +++   GY A  AE+
Sbjct: 1344 VEAQSVQELEGYAAYKAEE 1362


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 198 IGSSPRSWIPEVMRLMVFTISFSI 127
           +G+ P SW+ E     VF++ FSI
Sbjct: 593 LGAYPNSWVDETSNCFVFSLMFSI 616


>09_06_0373 +
           22632638-22633195,22633279-22633485,22633583-22633798,
           22635375-22635441,22635531-22635677,22635811-22635906,
           22636530-22636642,22636732-22636868,22637096-22637336
          Length = 593

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 98  VDLDRESQNLIEKLIVNTINR-ITSGIQERGLDPIYVE 208
           VD+DR++ N  E+L+  ++N   T+ +    L P++VE
Sbjct: 464 VDIDRDTYNKAEELLSLSLNEWATTLVASSSLHPVWVE 501


>05_07_0353 + 29497953-29499110
          Length = 385

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 465 ISSTTRLPLLATANSLPKMVA*PLTATAEA 376
           +S+TTRLPL+A   S    VA    ATAEA
Sbjct: 6   MSTTTRLPLVAALLSAAACVAAAQPATAEA 35


>12_02_0793 - 23200915-23202931,23203136-23203959
          Length = 946

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 175 DTRSDAVDGVHDQFFDQILAFSVKVNF 95
           D R+DA   VHD   D I++ SVK NF
Sbjct: 490 DGRADACR-VHDMILDLIISISVKENF 515


>11_08_0006 - 27548581-27549177
          Length = 198

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 436 GYSQFPAKDGGLTVDGDSRG 377
           G  QFP  DGG ++DG   G
Sbjct: 92  GQQQFPGNDGGRSIDGIDEG 111


>10_08_0479 - 18199310-18199348,18199938-18200255
          Length = 118

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 331 ETNYIQHRPCPPQTQRLCCRRQRSGH 408
           ET + QH   PP+ Q  C  R+R  H
Sbjct: 27  ETRHAQHHEKPPRHQSACLSRRRLHH 52


>03_05_0346 +
           23335753-23335854,23336268-23336473,23336530-23336705,
           23336832-23337064,23337546-23337963,23338045-23338262,
           23338905-23339168
          Length = 538

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 113 ESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYT 229
           E+ +L+ + I N+  R  SG+QER  DPI V  +  D T
Sbjct: 90  ENDSLLFRHIKNS--RRASGVQERNADPIDVSSSTHDDT 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,833
Number of Sequences: 37544
Number of extensions: 270841
Number of successful extensions: 933
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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