BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11c04f (594 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 34 0.098 05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839,403... 31 0.69 05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 31 0.92 02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 30 1.6 09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 2.8 02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 28 4.9 02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395... 28 4.9 09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 28 6.5 05_07_0353 + 29497953-29499110 28 6.5 12_02_0793 - 23200915-23202931,23203136-23203959 27 8.5 11_08_0006 - 27548581-27549177 27 8.5 10_08_0479 - 18199310-18199348,18199938-18200255 27 8.5 03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 27 8.5 >03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859, 5316945-5317055,5317536-5317643,5319082-5319149, 5319269-5319320 Length = 313 Score = 33.9 bits (74), Expect = 0.098 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +2 Query: 140 IVNTINRITSGIQ-ERGLDPIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDV 316 ++ + I+ I +RGL V+K G YT +S ++ T+ ++ ++ SN+ Sbjct: 61 VIKAVKNISMQIGGDRGLTSTAVKKG-GLYTLDVSSVYKYKSTLVDVKVDTESNISTTLT 119 Query: 317 TFNLLRPTTFSIDLALPKLSASAV 388 F++L T + LP ++ V Sbjct: 120 VFDVLPSTKLVTSVKLPDYNSGKV 143 >05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839, 4036631-4036827,4037000-4037170,4037292-4037432, 4037519-4037602,4037852-4037989,4038111-4038136, 4038292-4038346,4039094-4039198,4039303-4039371, 4040038-4040112 Length = 647 Score = 31.1 bits (67), Expect = 0.69 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = -3 Query: 439 TGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCA 260 +G+ FP G + V+ ++ GAE+GEG KV+ D +++ + + + + Sbjct: 9 SGFEAFPPLPGKVFVE-EAIGAEYGEGFETFRMDGPLKVDVDYLNEKLQECFLQRIRHAM 67 Query: 259 RCAED---VRNWESVIA 218 + E + +W++VIA Sbjct: 68 KPDEACGLIFSWDNVIA 84 >05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822, 21699927-21699992,21701064-21701203,21701424-21701473, 21701608-21702045,21702757-21702839,21702941-21702977, 21703366-21703457,21703531-21703615,21703950-21704029, 21704049-21704105,21704350-21704747,21706322-21707223, 21707331-21707421,21708123-21710273,21710375-21710813, 21711180-21711299 Length = 1836 Score = 30.7 bits (66), Expect = 0.92 Identities = 10/36 (27%), Positives = 24/36 (66%) Frame = +2 Query: 152 INRITSGIQERGLDPIYVEKAEGDYTFPISDIFSAS 259 + RI+ I+ERG++ + E+ +G Y+ + ++ ++S Sbjct: 1346 VQRISHAIRERGMNNVLAERIQGKYSVALGNLMASS 1381 >02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254, 4631539-4631603,4631714-4631857,4632141-4632194, 4632363-4632410,4632466-4632541,4632624-4632722, 4633000-4633097,4633615-4633719,4633816-4633924, 4634137-4634252,4634332-4634496 Length = 512 Score = 29.9 bits (64), Expect = 1.6 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -3 Query: 256 CAEDVRNWESVIAFGFFDVDWVKSTFLDTRSDAVDGVHDQF 134 C V N + FG F W S L+TR +DGV DQ+ Sbjct: 63 CVPGVPNHLTYADFGRFCASWA-SHILETRIIRIDGVEDQY 102 >09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559, 16033714-16033866,16034277-16034702,16035922-16037668, 16037687-16038183,16038519-16038709,16038786-16038941, 16040077-16040311,16040416-16040723,16041279-16041439, 16041852-16041895,16041975-16042067 Length = 1751 Score = 29.1 bits (62), Expect = 2.8 Identities = 22/100 (22%), Positives = 41/100 (41%) Frame = -3 Query: 487 ADSGDQTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVI 308 +++GD+++ D+AS D ++ +S G E S S K +S + Sbjct: 909 SENGDKSDGSTDEASVNKTESQVTGD----MNNESSGKSINPSSYQPENSISGKGDSIMS 964 Query: 307 DDNVADALESQFGYCARCAEDVRNWESVIAFGFFDVDWVK 188 +D + + S + E + N+E I + D D K Sbjct: 965 EDRMIGEINSNLSIISSAKEKIGNYERNIIENYVDADVAK 1004 >02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618, 14050145-14050272,14050409-14050502,14050749-14051237, 14052622-14052915,14053602-14053732,14053829-14055440, 14055539-14055651,14055902-14056933,14057023-14057145, 14057250-14057688 Length = 1656 Score = 28.3 bits (60), Expect = 4.9 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = -3 Query: 469 TNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEF--GEGKVDAECSWSQKVESDVIDDN- 299 +N FD + G Q PA+ + D RG+ F G+G + + + +D D Sbjct: 1284 SNPFDSDSDDGGREQRPARASSVPPPADQRGSLFGGGDGFSASSAAARSRYRNDFRDTGG 1343 Query: 298 -VADALESQFGYCARCAED 245 A +++ GY A AE+ Sbjct: 1344 VEAQSVQELEGYAAYKAEE 1362 >02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431, 3951554-3951754,3951861-3952203,3952286-3952344, 3952757-3953082,3953283-3953745,3954180-3954794, 3955600-3955896 Length = 993 Score = 28.3 bits (60), Expect = 4.9 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -1 Query: 198 IGSSPRSWIPEVMRLMVFTISFSI 127 +G+ P SW+ E VF++ FSI Sbjct: 593 LGAYPNSWVDETSNCFVFSLMFSI 616 >09_06_0373 + 22632638-22633195,22633279-22633485,22633583-22633798, 22635375-22635441,22635531-22635677,22635811-22635906, 22636530-22636642,22636732-22636868,22637096-22637336 Length = 593 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +2 Query: 98 VDLDRESQNLIEKLIVNTINR-ITSGIQERGLDPIYVE 208 VD+DR++ N E+L+ ++N T+ + L P++VE Sbjct: 464 VDIDRDTYNKAEELLSLSLNEWATTLVASSSLHPVWVE 501 >05_07_0353 + 29497953-29499110 Length = 385 Score = 27.9 bits (59), Expect = 6.5 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -1 Query: 465 ISSTTRLPLLATANSLPKMVA*PLTATAEA 376 +S+TTRLPL+A S VA ATAEA Sbjct: 6 MSTTTRLPLVAALLSAAACVAAAQPATAEA 35 >12_02_0793 - 23200915-23202931,23203136-23203959 Length = 946 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 175 DTRSDAVDGVHDQFFDQILAFSVKVNF 95 D R+DA VHD D I++ SVK NF Sbjct: 490 DGRADACR-VHDMILDLIISISVKENF 515 >11_08_0006 - 27548581-27549177 Length = 198 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 436 GYSQFPAKDGGLTVDGDSRG 377 G QFP DGG ++DG G Sbjct: 92 GQQQFPGNDGGRSIDGIDEG 111 >10_08_0479 - 18199310-18199348,18199938-18200255 Length = 118 Score = 27.5 bits (58), Expect = 8.5 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 331 ETNYIQHRPCPPQTQRLCCRRQRSGH 408 ET + QH PP+ Q C R+R H Sbjct: 27 ETRHAQHHEKPPRHQSACLSRRRLHH 52 >03_05_0346 + 23335753-23335854,23336268-23336473,23336530-23336705, 23336832-23337064,23337546-23337963,23338045-23338262, 23338905-23339168 Length = 538 Score = 27.5 bits (58), Expect = 8.5 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 113 ESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYT 229 E+ +L+ + I N+ R SG+QER DPI V + D T Sbjct: 90 ENDSLLFRHIKNS--RRASGVQERNADPIDVSSSTHDDT 126 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,640,833 Number of Sequences: 37544 Number of extensions: 270841 Number of successful extensions: 933 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 933 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1411925004 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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