Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c04f
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 40 0.002
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 31 0.93
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 31 0.93
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 28 6.5
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79) 27 8.6
SB_30055| Best HMM Match : Histone (HMM E-Value=0.97) 27 8.6
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 39.9 bits (89), Expect = 0.002
Identities = 40/126 (31%), Positives = 58/126 (46%)
Frame = -1
Query: 579 PKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKMVA* 400
P+ ++L+A S PT + S ++L SN K + T STT L L + SL
Sbjct: 125 PRTSSLKASSNTPTALSTTSLMSLPSTSNLKASSNTPTALSTTSLMSLPSTPSLEAS--- 181
Query: 399 PLTATAEALSLGRARSMLNVVGLKRLKVTSLTTTLLMPSRANSATVPDALKMSEIGKV*S 220
+ T ALS A S++++ L+ +S T T L + S +LK S S
Sbjct: 182 --SNTPTALS---ATSLMSLPSTSSLEASSNTPTALSATSLMSLPSTSSLKASSN----S 232
Query: 219 PSAFST 202
PSA ST
Sbjct: 233 PSALST 238
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 487 ADSGD-QTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDV 311
AD G Q+ I D+ + G K G+ +G+ + EGK +E + K S +
Sbjct: 378 ADEGKTQSGIADEGKTQNGVVDEEKKQSGVVDEGERQSGIADEGKTQSEIADEGKTHSGI 437
Query: 310 IDD 302
+D+
Sbjct: 438 VDE 440
>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 576
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/92 (19%), Positives = 38/92 (41%)
Frame = +2
Query: 257 SGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATIFGRELAVA 436
+ TV A+ + V V FN + + + ++S V + AT+ + ++
Sbjct: 390 AATVVSKAISTVGLGVAATVVFNAISTVELGVAATVVSKASSTVELGVAATVVSKAISTV 449
Query: 437 SSGSLVVEDIRLVSTVSLRLLPSINVRELSAV 532
G + +STV L + ++ + +S V
Sbjct: 450 GLGVAATVVSKAISTVGLGMAATVVFKAISTV 481
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = +2
Query: 260 GTVAELALEGISNV---VVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATIFGRELA 430
G A + + IS V + V FN + + + ++S V + AT+ + ++
Sbjct: 324 GMAATVVFKAISTVGLGMAATVVFNAISTVELGVAATVVSKASSTVELGVAATVVSKAIS 383
Query: 431 VASSGSLVVEDIRLVSTVSLRLLPSINVRELSAV 532
G + +STV L + ++ +S V
Sbjct: 384 TVGLGVAATVVSKAISTVGLGVAATVVFNAISTV 417
>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
Length = 929
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/87 (24%), Positives = 33/87 (37%)
Frame = -3
Query: 487 ADSGDQTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVI 308
+D D +N+ D + A DG DG S G + G D + + D +
Sbjct: 282 SDGDDVSNVASDGDDVSNV----ASDGDDVSDGSSDGDDVSNGSSDGDDVSDGSSDGDDV 337
Query: 307 DDNVADALESQFGYCARCAEDVRNWES 227
+ V+D + G +DV N S
Sbjct: 338 SNGVSDGDDVSDGDVVVTIDDVSNGAS 364
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 148 VHDQFFDQILAFSVKVNF*GHSNDAGSE 65
+ D+ FD +L FS + F H ND +E
Sbjct: 280 ISDEHFDNLLVFSAEAKFDLHGNDLTNE 307
>SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)
Length = 296
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 412 DGGLTVDGDSRGAEFGEGKVDAEC 341
DGG DGD G + G+G D +C
Sbjct: 234 DGGGDDDGDGDGVDDGDGDGDGDC 257
>SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)
Length = 129
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 451 KASTTGYSQFPAKDGGLTVDGDSRGAEFGEGK 356
K T G FPA+DGGL V G G+ K
Sbjct: 52 KEQTNGRLDFPARDGGLLVVMTMSGRGKGKAK 83
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 400 TVDGDSRGAEFGEGKVDAECSWSQKV--ESDVIDDNVADALE 281
++DGD G+E G + CS Q+ ES+ +D + +L+
Sbjct: 1237 SIDGDRGGSETGHRSTSSHCSDDQRAQEESEALDHDRLHSLQ 1278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,829
Number of Sequences: 59808
Number of extensions: 299318
Number of successful extensions: 1142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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