Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04f
         (594 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.        33   0.76 
U72355-1|AAC00056.1|  915|Homo sapiens Hsp27 ERE-TATA-binding pr...    31   3.1  
L43631-1|AAC18697.1|  864|Homo sapiens scaffold attachment facto...    31   3.1  
BC126219-1|AAI26220.1|  917|Homo sapiens scaffold attachment fac...    31   3.1  
AB208780-1|BAD92017.1|  772|Homo sapiens scaffold attachment fac...    31   3.1  
AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot...    29   9.4  
AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.     29   9.4  

>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
          Length = 4243

 Score = 33.1 bits (72), Expect = 0.76
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = +2

Query: 203  VEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSAS 382
            +++   DYT  + +I S +GT AE A E +S V   D++   + P T+++ L  P +  +
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLS-QSMTPFTYAVSLT-PLI--T 2094

Query: 383  AVAVNGQATIFGRELAVASSG-SLVVEDIRL 472
            AV+    +T  G  L V  SG S  +ED+ +
Sbjct: 2095 AVSPKRGSTAGGTRLTVVGSGFSENMEDVHI 2125


>U72355-1|AAC00056.1|  915|Homo sapiens Hsp27 ERE-TATA-binding
           protein protein.
          Length = 915

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150


>L43631-1|AAC18697.1|  864|Homo sapiens scaffold attachment factor B
           protein.
          Length = 864

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 59  GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 99


>BC126219-1|AAI26220.1|  917|Homo sapiens scaffold attachment factor
           B protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150


>AB208780-1|BAD92017.1|  772|Homo sapiens scaffold attachment factor
           B variant protein.
          Length = 772

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 130 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 170


>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
          Length = 1569

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 579  PKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKM 409
            P   TLR+ +T PTV  A +  T    S    +       +T  LP  AT+ + P +
Sbjct: 1286 PPTATLRSTATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLPTPATSGTSPTL 1342


>AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
 Frame = -1

Query: 588 TSXPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRL----PLLAT--- 430
           TS    T+L+  ++ PT  + LSSLT  + S+  +       S TT L    PLLAT   
Sbjct: 385 TSKTTLTSLKTTASRPTANSTLSSLTSSILSSTLVPSTDMITSHTTNLTRSSPLLATLPT 444

Query: 429 --ANSLP-KMVA*PLTATAEAL-SLGRARSMLNVVGLKRLKVTSLTTTLLMPSRANSATV 262
               S P      P + T+    S    R   ++ G   ++ +   T+  +P+   + T 
Sbjct: 445 TITRSTPTSETTYPTSPTSTVKGSTTSIRYSTSMTGTLSMETSLPPTSSSLPTTETATTP 504

Query: 261 PDALKMSEIGKV*SPSAFST*IGSS 187
              L  +EI    +PS  S+ I S+
Sbjct: 505 TTNLVTTEITSHSTPSFSSSTIHST 529


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,899,453
Number of Sequences: 237096
Number of extensions: 1401501
Number of successful extensions: 3317
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3317
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)