Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c04f
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    31   0.82 
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    29   1.9  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    27   7.6  

>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 173 IQERGLDPIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTF 346
           +QE+G D IYV+K   +    I+++      + EL   G    V+  V+  LL    F
Sbjct: 491 LQEKGFDDIYVQKKHAENCTAIAELPRVLAKIDELKNTGDEKTVLEYVSRGLLAGNVF 548


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical protein
            C25A1.7 protein.
          Length = 970

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 334  SQKVESDVIDDNVADALESQFGYCARCAEDVRN 236
            SQ +  +  D+N  + +ES+  YC RC +  RN
Sbjct: 921  SQVILHENRDENSVELVESRLRYCERCRKHTRN 953


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
            synthetase (mitochondrial)protein.
          Length = 972

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 334  SQKVESDVIDDNVADALESQFGYCARCAEDVRN 236
            SQ +  +  D+N  + +ES+  YC RC +  RN
Sbjct: 921  SQVILHENRDENSVELVESRLRYCERCRKHTRN 953


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 588 TSXPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLT-VETRRISSTTRLPLLATANSLPK 412
           T+ P + T  A +TLPT   AL + T    +  K+T V T   ++TT+ P   T   L  
Sbjct: 354 TTTPVKVT-PATTTLPTTSLALETTTTATRTTAKITAVATVARTNTTQPP---TTTPLSS 409

Query: 411 MVA*PLTATAEA 376
             A P T T+ +
Sbjct: 410 TTALPTTLTSSS 421


>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
 Frame = -1

Query: 570 TTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRI----SSTTRLPLL---ATANSLPK 412
           T     +T P + T  SS T  L S   +T     I    ++TT  P+    AT    P 
Sbjct: 465 TAASGTTTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPV 524

Query: 411 MVA*PLTATAEALSLGRARSMLNVVGLKRLKVTSLTTTLLMP 286
               P+T +    S     ++   +GL   +V+  TTT   P
Sbjct: 525 PFTPPVTNSTTIYSSNTGSTLSTTIGLPITQVSVQTTTQTAP 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,982
Number of Sequences: 27780
Number of extensions: 224640
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)