Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11c04f
(594 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29220.1 68417.m04180 phosphofructokinase family protein simi... 31 0.77
At1g71520.1 68414.m08267 AP2 domain-containing transcription fac... 31 0.77
At4g18030.1 68417.m02684 dehydration-responsive family protein s... 30 1.3
At5g28800.1 68418.m03541 hypothetical protein predicted protein,... 29 1.8
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 29 1.8
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm... 28 4.1
At1g74100.1 68414.m08582 sulfotransferase family protein similar... 28 4.1
At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SD... 28 4.1
At1g18590.1 68414.m02318 sulfotransferase family protein similar... 28 5.4
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c... 27 7.1
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c... 27 7.1
At2g36810.1 68415.m04514 expressed protein 27 7.1
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 27 9.4
At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1... 27 9.4
>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
to phosphofructokinase [Amycolatopsis methanolica]
GI:17432243; contains Pfam profile PF00365:
Phosphofructokinase
Length = 473
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = +2
Query: 158 RITSGIQERGLDPIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRP 337
+I IQ+RG++ +Y+ +G + ++A+ GI + ND+ +
Sbjct: 172 KIVDSIQDRGINQVYIIGGDGSQKGAAAIFEEIRKRKLKVAVAGIPKTIDNDIP---IID 228
Query: 338 TTFSIDLALPKLSASAVAVNGQATIF 415
+F D A+ + + A + +AT F
Sbjct: 229 RSFGFDTAVEEAQRAINAAHVEATSF 254
>At1g71520.1 68414.m08267 AP2 domain-containing transcription
factor, putative
Length = 143
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 427 QFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALE 281
Q A D G+ VD GA G G + S + E D + +V D LE
Sbjct: 91 QKAASDAGMAVDAGFHGAVSGSGGCEERSSMANMEEEDKLSISVYDYLE 139
>At4g18030.1 68417.m02684 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 621
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 140 IVNTINRIT-SGIQERGLDPIYVEKAEGDYTFPIS-DIFSASG 262
++ TIN+ T S + ERGL IY + EG T+P + D ASG
Sbjct: 487 VIPTINKNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASG 529
>At5g28800.1 68418.m03541 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 118
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +2
Query: 95 KVDLDRESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYTFPISD-IFSASGTVA 271
K+ R+ +N+I+K +V ++ +S I +R +E A + +FP S+ +FS G A
Sbjct: 11 KMTKKRKKKNIIKKRMVKALHVSSSPIFDRNSSKPVIEFAVLEGSFPSSNHLFSGGGVAA 70
Query: 272 EL-ALEG 289
++EG
Sbjct: 71 SSHSIEG 77
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +2
Query: 89 PSKVDLDRESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYTFPISDIFSASGTV 268
P+KV L RES L+ N + TS ++ ++ ++ ++ D P SDI +
Sbjct: 764 PAKVTLSRESIEFGIGLLQNDLKGSTSSKKDIVVENVFEKRLLSDVILP-SDIDVTFDDI 822
Query: 269 AELALEGISNVVVNDVTFNLLRPTTF 346
ALE + +++ V L RP F
Sbjct: 823 G--ALEKVKDILKELVMLPLQRPELF 846
>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
gamma-amino-N-butyrate transaminase / GABA transaminase
/ beta-alanine--oxoglutarate aminotransferase identical
to gamma-aminobutyrate transaminase subunit precursor
[Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
contains Pfam profile PF00202: aminotransferase, class
III; identical to cDNA gamma-aminobutyrate transaminase
subunit precursor, nuclear gene for mitochondrial
product GI:14030434
Length = 504
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 113 ESQNLIEKLIVNTINRITSGIQERGLDPIYVEKAEGDYTF 232
E +N + + + T+G Q LDP+ + K+EG Y +
Sbjct: 43 EKKNTVGSKGHDMLAPFTAGWQSADLDPLVIAKSEGSYVY 82
>At1g74100.1 68414.m08582 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 338
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 479 WRPDEYLRRQGFHYW 435
WRPDE L + G H+W
Sbjct: 38 WRPDEILTQYGGHWW 52
>At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from [Forsythia x intermedia]
Length = 285
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -3
Query: 391 GDSRG-AEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAEDVRNWESVIAF 215
G+S+ A F G V E S V+ V + D L + G C D+RN+ S+ F
Sbjct: 67 GESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNY-SLSEF 125
Query: 214 GF-FDVDWVKSTFLDTRSDA 158
FDV+ VK FL + A
Sbjct: 126 EMTFDVN-VKGAFLSMKHAA 144
>At1g18590.1 68414.m02318 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 346
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 479 WRPDEYLRRQGFHYWLQPI 423
WRP + G H+WLQP+
Sbjct: 46 WRPKDPFVEYGGHWWLQPL 64
>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 577 EENNFESGLNIANSKNG 527
E NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153
>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 577 EENNFESGLNIANSKNG 527
E NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153
>At2g36810.1 68415.m04514 expressed protein
Length = 1071
Score = 27.5 bits (58), Expect = 7.1
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Frame = -1
Query: 558 ADSTLPTVRT---ALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKMVA*PLTA 388
A+S+L + T AL++ T ++ KLT+ETR + + SLPK V LT+
Sbjct: 601 AESSLEVLHTQALALNACTTLVSVEPKLTIETRNRVMKILDQFFSISLSLPKAV---LTS 657
Query: 387 TAEALSLGRARSMLNVVGLKRLKVTSLTTTLLMPSRANSATVPDALKMSEIGKV*SPSAF 208
++ +A S L V ++ +L+ + +A + D ++ S G + + + F
Sbjct: 658 GLDSEDSYKALSSLE-------DVIAILKSLVAALHSCTAAICDKIRQSAEGAIQAVTEF 710
Query: 207 ST*IGS 190
+ GS
Sbjct: 711 VSRRGS 716
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to cDNA
DNA ligase IV, GI:9651814
Length = 1219
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = -3
Query: 484 DSGDQTNIFDDKASTTGYSQFPAKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVID 305
D ++ I +D FP T + E+ + V EC S+K + D
Sbjct: 1124 DMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSNRTTGEYRKANVSGECESSEKRKLDAET 1183
Query: 304 DNVA 293
DN +
Sbjct: 1184 DNTS 1187
>At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 269
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 358 KVDAECSWSQKVESDVIDDNVADALESQFGYCARC 254
++ ++ W + + I N ++AL S GYC+ C
Sbjct: 167 RMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYC 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,040
Number of Sequences: 28952
Number of extensions: 213984
Number of successful extensions: 715
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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