BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11c02r (392 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.17 AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 30 0.68 AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 30 0.68 AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 1.6 Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 26 8.4 AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 8.4 >AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related. see also lmb-protein 1 protein. Length = 1067 Score = 31.9 bits (69), Expect = 0.17 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 272 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 168 +C SG +G RC C HWGS + G+ R +GN Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009 >AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical protein Y64G10A.7 protein. Length = 1651 Score = 29.9 bits (64), Expect = 0.68 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Frame = -1 Query: 287 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 117 EH SC+SG G +C C + D ISG S G + +C L+ + Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249 Query: 116 GRQHCVTVDXCCH 78 GR HC C + Sbjct: 1250 GR-HCSQSCRCAN 1261 Score = 27.9 bits (59), Expect = 2.7 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -1 Query: 290 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 111 KE+G CI G G C + +G R + + RK RC L +SG Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194 Query: 110 QHC 102 +HC Sbjct: 1195 EHC 1197 >AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical protein Y64G10A.7 protein. Length = 1651 Score = 29.9 bits (64), Expect = 0.68 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Frame = -1 Query: 287 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 117 EH SC+SG G +C C + D ISG S G + +C L+ + Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249 Query: 116 GRQHCVTVDXCCH 78 GR HC C + Sbjct: 1250 GR-HCSQSCRCAN 1261 Score = 27.9 bits (59), Expect = 2.7 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -1 Query: 290 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 111 KE+G CI G G C + +G R + + RK RC L +SG Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194 Query: 110 QHC 102 +HC Sbjct: 1195 EHC 1197 >AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical protein Y45F10B.10 protein. Length = 1592 Score = 28.7 bits (61), Expect = 1.6 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 74 YHGSXSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 226 YH + QL GH +V CLCSS +S S + +SQ TP+ Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946 >Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical protein F44D12.2 protein. Length = 342 Score = 26.2 bits (55), Expect = 8.4 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 223 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 321 +CH+ + PRLP ++ + C FC + A R Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245 >AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein 2 protein. Length = 203 Score = 26.2 bits (55), Expect = 8.4 Identities = 8/30 (26%), Positives = 18/30 (60%) Frame = +1 Query: 202 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 291 L+E DP C ++ +++P++ +E +F Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,084,005 Number of Sequences: 27780 Number of extensions: 141479 Number of successful extensions: 295 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 295 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 598330768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -