Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c01r
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.2  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   3.8  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   8.8  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 627 KKSSQYHSG*CKDLNDTPKSVQHLKVIVQYR 719
           +++ ++H+   +D  DTP+ V+  KVI QYR
Sbjct: 345 RQNFRFHTQQSEDSFDTPEGVELSKVIKQYR 375


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 627 KKSSQYHSG*CKDLNDTPKSVQHLKVIVQYR 719
           +++ ++H+   +D  DTP+ ++  K+I QYR
Sbjct: 345 RQNFRFHTQQSEDSFDTPEGIELSKIIKQYR 375


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = -2

Query: 324 SQNC*FKKCDKKLVALFLR*TILP*ILC-LSFKVRVIKYIYEKTVSNIAL*IDGRKFKQI 148
           S +C  ++     ++LFL+   L  +L   + K+++   +Y++ + N+        F  I
Sbjct: 546 SCSCNLRENQPGSLSLFLQIDALELLLRKTALKLKLTDAVYQQEMLNVVQRCVSH-FLAI 604

Query: 147 FSSLFTNQYYPFHFIYFRIL*YVLCVVLIYQNVNKSF 37
             S FT+ ++P+   YF IL   +  + +    N++F
Sbjct: 605 NESHFTDFFWPYSQFYFCILSSAIIKMYLDFEFNENF 641


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 37  KTFVYILIDQYYTQYILKYSKVYKMKRIVLI 129
           K FVY+  D YY +  LK+ K ++     ++
Sbjct: 274 KLFVYVSQDGYYWEEALKFHKGFEFDAFTIL 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,267
Number of Sequences: 5004
Number of extensions: 52511
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)