Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c01f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...   113   3e-26
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    36   0.004
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    32   0.079
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    29   0.73 
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    27   1.7  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    27   3.0  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   6.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   6.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.0  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score =  113 bits (271), Expect = 3e-26
 Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
 Frame = +3

Query: 207 HEPDKPNIQT-AIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAF 383
           +EP  P+I+T  IPGPK +   +E++      AV+   DY+KSIGNY  D DGN  LD +
Sbjct: 16  NEPQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVY 75

Query: 384 TQISSLPVGYNHPELLSAFEDQHNLKSLINRPALGVFPSADWPEKLKNVLLSVGPVGLDN 563
           +QI+++P+GYN+P LL A +       L+NRPALG +P  +W        +   P G   
Sbjct: 76  SQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYPPKEWARVAYEGAIKYAPKGQKY 135

Query: 564 IATMMCGSCSIENAYKTVFI 623
           +   M GS + E AYK   +
Sbjct: 136 VYFQMSGSDANEIAYKLAML 155


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
 Frame = +3

Query: 279 NTLQQAGA--VQLFADYD----KSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAF 440
           N +++ GA  + ++A Y     K  G+Y FD +G  ++D  + ++   +G+ HPE+    
Sbjct: 38  NIIKKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLA 97

Query: 441 EDQ-----HNLKSLINRPAL 485
            DQ     H+     N PA+
Sbjct: 98  ADQCSKLVHSSNLFYNEPAI 117


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 321 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 476
           + K+ G   +D +G  +LD  +  S++  G+ HP+++ A  +Q    +L +R
Sbjct: 35  FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSR 86


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -2

Query: 630 DTI*IQFYTHSQ*NRSHTSLSLCCPTQRV 544
           DTI + FY H++  +++T ++LC P +++
Sbjct: 100 DTIPMPFYLHAKCLKNNTHITLCSPERKI 128


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/98 (22%), Positives = 40/98 (40%)
 Frame = +3

Query: 336 GNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINRPALGVFPSADWPE 515
           G Y +  DG   +DA    +   +G+ + E++ A   Q      I+       P+    +
Sbjct: 36  GVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSNEPA----D 91

Query: 516 KLKNVLLSVGPVGLDNIATMMCGSCSIENAYKTVFIWY 629
           KL N+L+S  P           GS ++E   K +  ++
Sbjct: 92  KLANLLVSEHPDVFARAYFANSGSEAVETCLKLILQYW 129


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +3

Query: 204 QHEPDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNY 344
           +H+  + ++QT  P P    LLK + + ++  +  +  D + +   Y
Sbjct: 93  EHDDSQDSLQTLAPSPSYVPLLKVIGSSEEVNSNLVLTDLETNTDGY 139


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 SVLQHEPDKPNIQTAIPGPKSQQLLKE 275
           SV Q +P  PN++  +P P + + L+E
Sbjct: 393 SVSQSQPASPNLRFNMPAPLATRFLQE 419


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 456 DCVDLQMRLIIQDDYTPREVKIFV*-----KHLGMHYHRRQRNNFQYFC 325
           + +D   R+I + D    + KIF       K LG+H  R+ +N+++Y C
Sbjct: 773 EAMDKASRVISEADEEAMKNKIFKIEGTQRKILGIHSRRKLKNSYEYEC 821


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +3

Query: 57  YLPNYKFDLEVQQNLEVRSTKFLILSIKMLLRTSRSA---HVFRGVRAYSVLQHEPDKPN 227
           +LP     L+VQ +  +RS   L LS K LL  S  +    ++R     +++Q    + +
Sbjct: 246 HLPIKMGPLDVQTHPNIRSIASLALSRKALLPISSPSIPMSIYRSTPPDTIIQQLTTQSD 305

Query: 228 IQTAIPGPKSQ 260
             +A+  P +Q
Sbjct: 306 DISAVSSPATQ 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,720
Number of Sequences: 5004
Number of extensions: 51840
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)