Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c01f
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           29   2.4  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 61/166 (36%), Positives = 85/166 (51%)
 Frame = +3

Query: 132 SIKMLLRTSRSAHVFRGVRAYSVLQHEPDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQL 311
           S++ L  + R+ H+ R V   S    E +  +++T++PGPKSQ           +  ++ 
Sbjct: 97  SLRRLSSSRRALHISRPVLVASFNIDEYEGIDMRTSVPGPKSQS----------SKGMKY 146

Query: 312 FADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINRPALGV 491
           F D++KS GNY  DADGN  LD + QI+S+P+GYNHP LL A +D               
Sbjct: 147 FVDFEKSKGNYVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD--------------- 191

Query: 492 FPSADWPEKLKNVLLSVGPVGLDNIATMMCGSCSIENAYKTVFIWY 629
                 PE L      V P GL  + TM CG+C+ ENA K   IWY
Sbjct: 192 ------PEIL------VSPKGLTEVTTMACGTCANENAIKAACIWY 225


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 348 FDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 476
           +D  G  ++D     S++  G+ HP ++ A +DQ  + SL +R
Sbjct: 2   WDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSR 44


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 321 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 449
           YD     YFFD D + F        +  + Y   E +S+FED+
Sbjct: 73  YDAETKEYFFDRDPDLFRHLLNYYRNGKLHYPRGECVSSFEDE 115


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -1

Query: 607 YAFSIEQEPHIIVAMLSNPTGPTDNNTFFNFSGQSAEGKTPRAGLLIKD-LRXXXXXXXX 431
           Y   +++  H   A L + T  T      N    S EGK  + G L+K+ L         
Sbjct: 225 YRIGVQKHTHKSHAKLQHQTDATPPADKSNVFDSSCEGKWKKDGSLVKEPLNSRLRESIK 284

Query: 430 XXXXXLYPTGSEDI 389
                  P+G++DI
Sbjct: 285 PANDDTIPSGTDDI 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,625,260
Number of Sequences: 59808
Number of extensions: 351289
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)