Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11c01f
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p...    38   0.004
At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p...    36   0.029
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm...    34   0.089
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    32   0.27 
At5g27610.1 68418.m03308 myb family transcription factor contain...    28   5.9  
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ...    27   7.8  

>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 476

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 342 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNL 458
           Y +D  G  +LDAF  I ++  G+ HP++L+A  +Q  L
Sbjct: 88  YLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQSKL 126


>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 481

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 342 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNL 458
           Y FD +G  +LDAF  I+++  G+ HPE++++   Q  L
Sbjct: 93  YVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKL 131


>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
           gamma-amino-N-butyrate transaminase / GABA transaminase
           / beta-alanine--oxoglutarate aminotransferase identical
           to gamma-aminobutyrate transaminase subunit precursor
           [Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
           contains Pfam profile PF00202: aminotransferase, class
           III; identical to cDNA gamma-aminobutyrate transaminase
           subunit precursor, nuclear gene for mitochondrial
           product GI:14030434
          Length = 504

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 327 KSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHN 455
           KS G+Y +D  G  +LD+   +    +G N P L+SA  +Q N
Sbjct: 75  KSEGSYVYDDTGKKYLDSLAGLWCTALGGNEPRLVSAAVEQLN 117


>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 342 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 449
           Y FD  G  +LDAF  I+ +  G+ HP+++    +Q
Sbjct: 90  YLFDESGRRYLDAFAGIAVVNCGHCHPDVVEPVINQ 125


>At5g27610.1 68418.m03308 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 969

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 LAREIEKCVIICWTRWVGQHSDNDVWLLF 592
           L R+I+KC+ IC    + +H  +D  +LF
Sbjct: 705 LRRQIDKCLAICKEARLNRHPSSDASVLF 733


>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
           Pfam domain PF03107: DC1 domain
          Length = 578

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 504 DWPEKLKNVLLSVGPVGLDNIATMMCGSCSIE 599
           DWP+K+K+VL     + L  +    C  C  E
Sbjct: 493 DWPKKVKHVLHEEHELELTRVQVYTCDKCEEE 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,202
Number of Sequences: 28952
Number of extensions: 254917
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)