Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b24r
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    96   3e-22
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.54 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.9  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   6.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
 Frame = -3

Query: 622 CGGNILNQRSILSAAHCPYGDATGRWRIRVG-----STFANSGGVVHNVNRIIIHPNYNR 458
           CG  I+++R +L+AAHC   + T +  I VG     S    +  V+H++N++IIHP Y+ 
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 457 RTAD----SDLCILRSNSNIAYNNNVRPINIAGANY-NLGDNQVVWAAGWGATSLGGSNS 293
              D    +D+ +L++  +I + + V P  +   ++ +      V   GWG TS  G  S
Sbjct: 248 IEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLS 307

Query: 292 EQLRHVQVWTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR--- 122
             L+   +  + Q  C + Y      I  N +C+      G+D CQ DSGGP+L      
Sbjct: 308 HILQKTTLNMLTQVECYKYY----GNIMVNAMCA---YAKGKDACQMDSGGPVLWQNPRT 360

Query: 121 ---VLVGVCSWGQYCADRRFPGVNVRVSRFTSWIQSNS 17
              V +G+ SWG  C   ++P  N +V  +  WI S +
Sbjct: 361 KRLVNIGIISWGAECG--KYPNGNTKVGSYIDWIVSQT 396



 Score = 25.0 bits (52), Expect = 0.72
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 716 RIIGGSTTNINQYP 675
           RI+GG+ T IN++P
Sbjct: 160 RIVGGTNTGINEFP 173


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +2

Query: 329  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNT 508
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+      NS+ V  + 
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSI------NSITVEKDV 875

Query: 509  PTVGKGGTNTNTP 547
                K    TNTP
Sbjct: 876  INDVKTQITTNTP 888


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 449 SSTSVIVG-MNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGT 586
           SS  V +G  ND++  +   +P+   GG+++ +P++ S    +VS T
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPT 106


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 76  DGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 174
           D + S +P  R++ G   G     S PGTGR+H
Sbjct: 374 DLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 326 TSSPNNLVITKIVIGTSNINRTNVVVISY 412
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 541 IRVGSTFANSGGVVHNVNRIIIHPNYN 461
           +R  S   N GGV H  N  + H N++
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHH 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,922
Number of Sequences: 438
Number of extensions: 5381
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)