Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b23r
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0306 + 17307166-17309091 33 0.15
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 33 0.20
05_01_0141 - 937428-937717,938483-938705 32 0.45
07_01_0311 - 2211824-2212410,2213275-2213290 28 5.6
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 7.4
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 9.7
08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048... 27 9.7
>12_02_0306 + 17307166-17309091
Length = 641
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 543
G+G T+ G GA +G S T G GT+ G A G G TF G+ GV
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDAR-GGARDGVGETFIGVGAGAGAGV 529
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 543
G+G T+ G GA +G S T G GT+ G A G G T G+ GV
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTVVGAGAGAGV 262
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 543
G+G T+ G GA +G S T G GT+ G A G G T G+ GV
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTGVGAGAGAGV 413
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 471
G+G T+ G GA +G S T G GT+ G A
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 471
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 445 LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWT 624
LGT+ + AM TG TAGF +F+ S S L S +I+ WTR ++ G +T
Sbjct: 43 LGTLFSFMAMRTGLTAGFVPSFNMSASLL--------SFFIIKSWTRLMARCGVASQPFT 94
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 318 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 497
++SH HG H G+ GH+GG+ H G+ L + + G HG + L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153
Query: 498 F 500
F
Sbjct: 154 F 154
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 306 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 416
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 306 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 416
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
>07_01_0311 - 2211824-2212410,2213275-2213290
Length = 200
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 379 ATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSST-FDCSGSTLSTGVA 546
A + GSAT A +G +A +GT G ++ G TAG + + + T+ TG A
Sbjct: 100 AGIGGSATFGTAGMGGNAVFGTIGTAGIGGSVAAG-TAGMAGIGGNVTAGTVGTGTA 155
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 373 LGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGF--SSTFDCSG 522
L A AG+A I G +A G+G + + T TAG S+TF +G
Sbjct: 61 LAAGTAGTAGIGGNVAAGTAGTAGIGGTVTAGTVGTAGTAGIGGSATFGTAG 112
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 303 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 404
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 306 GHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDHRGYTRS 425
GH ++S D HQ H N H +G NG HD + + ++
Sbjct: 647 GHR-QMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQN 686
>08_02_0767 +
21004373-21004545,21004656-21004711,21004800-21004882,
21004942-21005112,21005806-21005997
Length = 224
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 424 PSATITGL-GTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSC 597
P + GL G +AG +M + + A +S D GV + L++ R+W + C
Sbjct: 9 PLGGLDGLYGVQLAGRSMYSDDEAVKTSIIDPLAREPQEGVGTSRRLLIRRLWQQRPPC 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,685,436
Number of Sequences: 37544
Number of extensions: 202042
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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