Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b20r
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26710.2 68417.m03850 ATP synthase subunit H family protein c...    55   5e-08
At4g26710.1 68417.m03849 ATP synthase subunit H family protein c...    55   5e-08
At5g55290.1 68418.m06890 ATP synthase subunit H family protein c...    52   4e-07
At1g74055.1 68414.m08577 expressed protein                             29   3.7  
At3g07770.1 68416.m00947 heat shock protein-related strong simil...    28   4.9  
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.6  

>At4g26710.2 68417.m03850 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
 Frame = -2

Query: 677 SILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGPRL 513
           S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P L
Sbjct: 7   SLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVPIL 66

Query: 512 S 510
           S
Sbjct: 67  S 67


>At4g26710.1 68417.m03849 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
 Frame = -2

Query: 677 SILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGPRL 513
           S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P L
Sbjct: 7   SLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVPIL 66

Query: 512 S 510
           S
Sbjct: 67  S 67


>At5g55290.1 68418.m06890 ATP synthase subunit H family protein
           contains weak similarity to Vacuolar ATP synthase
           subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase
           9.2 kDa membrane accessory protein) (Swiss-Prot:P81103)
           [Bos taurus]; contains Pfam profile PF05493: ATP
           synthase subunit H
          Length = 70

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
 Frame = -2

Query: 674 ILWGVVGIICP-IFAPKGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGPRLS 510
           ++ G++  +C  I   +GP+  ++ + L++TA  C W+ W   Y+AQMNPLI P LS
Sbjct: 11  VVVGIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVPILS 67


>At1g74055.1 68414.m08577 expressed protein
          Length = 144

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -2

Query: 626 GPNRGIIQVVLILTAATCWLFWLCA-------YMAQMNPLIGPRLSNETLIWISRTW 477
           GP   +I V++IL   +C+L   CA        +A++NPL   + S   L W+ R W
Sbjct: 53  GPFFAVISVLIILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIK-SGGLLGWLRRKW 108


>At3g07770.1 68416.m00947 heat shock protein-related strong
           similarity to heat-shock protein [Secale cereale]
           GI:556673; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 803

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 506 ETLIWISRTWGNKINNTQA*SSDLKSPC---RGLVGWFKNVTMIVKS 375
           +T  WI +  G+K+ + Q  +    SPC    G  GW  N+  ++K+
Sbjct: 638 QTCDWIKKRLGDKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKA 684


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -2

Query: 548 MAQMNPL-IGPRLSNETLIWISRTW---GNKINNTQA*SSDLKSPCRGLV--GWFKNVTM 387
           +AQ+  L +G   SN+  IW+ R W   G+  N  Q    + +   RGLV  GW   V +
Sbjct: 297 LAQLKELGLGLEASNKPFIWVIREWGKYGDLANWMQQSGFEERIKDRGLVIKGWAPQVFI 356

Query: 386 I 384
           +
Sbjct: 357 L 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,245,935
Number of Sequences: 28952
Number of extensions: 278976
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)