Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b20f
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26710.2 68417.m03850 ATP synthase subunit H family protein c...    56   3e-08
At4g26710.1 68417.m03849 ATP synthase subunit H family protein c...    56   3e-08
At5g55290.1 68418.m06890 ATP synthase subunit H family protein c...    55   3e-08
At1g74055.1 68414.m08577 expressed protein                             29   3.3  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    28   4.4  
At3g07770.1 68416.m00947 heat shock protein-related strong simil...    28   4.4  
At5g36970.1 68418.m04433 harpin-induced protein-related / HIN1-r...    27   7.7  
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    27   7.7  
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.7  

>At4g26710.2 68417.m03850 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +3

Query: 117 VFSILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGP 281
           V S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P
Sbjct: 5   VTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVP 64

Query: 282 RLS 290
            LS
Sbjct: 65  ILS 67


>At4g26710.1 68417.m03849 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +3

Query: 117 VFSILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGP 281
           V S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P
Sbjct: 5   VTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVP 64

Query: 282 RLS 290
            LS
Sbjct: 65  ILS 67


>At5g55290.1 68418.m06890 ATP synthase subunit H family protein
           contains weak similarity to Vacuolar ATP synthase
           subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase
           9.2 kDa membrane accessory protein) (Swiss-Prot:P81103)
           [Bos taurus]; contains Pfam profile PF05493: ATP
           synthase subunit H
          Length = 70

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +3

Query: 90  MGYSLIPIFVFSILWGVVGIICP-IFAPKGPNRGIIQVVLILTAATC-WLFWLCAYMAQM 263
           MG+ LI   +F ++ G++  +C  I   +GP+  ++ + L++TA  C W+ W   Y+AQM
Sbjct: 1   MGF-LITTLIFVVV-GIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQM 58

Query: 264 NPLIGPRLS 290
           NPLI P LS
Sbjct: 59  NPLIVPILS 67


>At1g74055.1 68414.m08577 expressed protein
          Length = 144

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +3

Query: 174 GPNRGIIQVVLILTAATCWLFWLCA-------YMAQMNPLIGPRLSNETLIWISRTW 323
           GP   +I V++IL   +C+L   CA        +A++NPL   + S   L W+ R W
Sbjct: 53  GPFFAVISVLIILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIK-SGGLLGWLRRKW 108


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 170 RCEDGANNTNHTPKDGENED--RDKGVAHFEMLFRYFF*FRLSQTNISCPKMVD 15
           RC    NNTN+  K   N +  R+  VA FE     F    L   ++S   +VD
Sbjct: 24  RCTQRDNNTNNNKKKNNNNNNVRNIHVAAFEKNLNVFVRDHLENCSVSVDDVVD 77


>At3g07770.1 68416.m00947 heat shock protein-related strong
           similarity to heat-shock protein [Secale cereale]
           GI:556673; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 803

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 294 ETLIWISRTWGNKINNTQA*SSDLKSPC---RGLVGWFKNVTMIVKS 425
           +T  WI +  G+K+ + Q  +    SPC    G  GW  N+  ++K+
Sbjct: 638 QTCDWIKKRLGDKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKA 684


>At5g36970.1 68418.m04433 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related weak
           similarity to harpin inducing protein (hin1), Nicotiana
           tabacum, EMBL:AF212183, GI:1619321
          Length = 248

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96  YSLIPIFVFSILWG-VVGIICPIFAPKGPNRGIIQVVL 206
           Y+L+ +F+  ++ G +VGI+  +F PK P+  I ++ L
Sbjct: 64  YTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQL 101


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = +3

Query: 90  MGYSLIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAYMAQMNP 269
           + Y L+ IF  ++ + V G+ C   + K     +I   +++ + T + FW        N 
Sbjct: 94  VNYLLLGIFTVALAFAV-GLTCAFTSGKVILESVILTAVVVISLTLYTFWAAKRGHDFN- 151

Query: 270 LIGPRLSNETLI 305
            +GP L    ++
Sbjct: 152 FLGPFLFGAVIV 163


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +3

Query: 252 MAQMNPL-IGPRLSNETLIWISRTW---GNKINNTQA*SSDLKSPCRGLV--GWFKNVTM 413
           +AQ+  L +G   SN+  IW+ R W   G+  N  Q    + +   RGLV  GW   V +
Sbjct: 297 LAQLKELGLGLEASNKPFIWVIREWGKYGDLANWMQQSGFEERIKDRGLVIKGWAPQVFI 356

Query: 414 I 416
           +
Sbjct: 357 L 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,383,876
Number of Sequences: 28952
Number of extensions: 270372
Number of successful extensions: 551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)