Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b19r
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              25   0.93 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.93 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.0  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = -3

Query: 661 VRFIWVRYGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPTDFISPVALSASEDLP 482
           ++ I V +   + +N   + E   ++LH    I       D Q  D I+ V     ++ P
Sbjct: 1   MKTIVVIFAFCICVNAMTIEELK-IQLHDVQEICKTESGIDQQTVDDINEVNFDVEDEKP 59

Query: 481 ESGNVC 464
           +  N C
Sbjct: 60  QRYNEC 65


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 507 LCLPARTYPNPEMSAALAKSTANLESN*AASTC--PWC-PPTVSLRPPA 370
           L L AR  PN  +  +LA   ++L S    S C  P   P T    PP+
Sbjct: 267 LLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGFLPPS 315


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 508 ALSASEDLPESGNVCGFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSKYDV 341
           +++ +E L E  N C + ++   PGE  S   ++V     +    S   +T ++DV
Sbjct: 7   SMTQTELLQELTNDCRYDKMTRPPGEINSINPINVYTKAYIYTIKSNMAKTLQFDV 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 408 DTSKQLSCSPGSPSTSPKPQTFP 476
           D+ + L+ S  SPS SP+P   P
Sbjct: 870 DSQQPLNLSKKSPSPSPRPLVGP 892


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 585 VCTPRIPLVSSASTGMSNPLTS 520
           VC+P + + +S + G   PLT+
Sbjct: 35  VCSPDLSVFTSPACGSETPLTN 56


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 351 LEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGR 488
           +EV P S +    PS        Q+SC   SP     P +  +SGR
Sbjct: 365 IEVIPLSAIPE--PSKNPAMGHWQMSCVACSPPPRQTPPSRKESGR 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,073
Number of Sequences: 438
Number of extensions: 2877
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)