Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b18r
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    37   0.002
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    28   1.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   3.4  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   6.0  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   7.9  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    25   7.9  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = -2

Query: 639 DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMA 463
           +G+    +KG +++D      P+  ++   +A +KG+ F  + VSGG  GA+    + M 
Sbjct: 89  EGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGSGVSGGEEGARYGP-SLMP 146

Query: 462 GGRKEDFERSLPLLKVMGAKQFH---C----GQIGSGQVAKLTNN 349
           GG    + R  P+ + + AK  +   C    G+ G+G   K+ +N
Sbjct: 147 GGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKMVHN 191


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 416 TLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 550
           T+R+GR  S SS  PP       +  P + P+TGAS +  PF+ +
Sbjct: 110 TMRQGRFPSSSSEFPPKNSK---YQLPGSMPNTGASSSQDPFTNS 151


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 164 PS*FLLDGAVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAI-PVMP 340
           P  F+  G VG S G   Y+S+     +E FS+       S ++ P+++  A+AI  V+P
Sbjct: 419 PPIFMFFGVVGISNGLVNYSSLIISEINENFSSVT----VSLLVAPIWVFDAIAILTVLP 474

Query: 341 IN 346
           ++
Sbjct: 475 LH 476


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 389 PQWNCLAPITLRRGRDLSKSSLRPPAMK 472
           PQ +C   ++L    DLSKSSL  P  K
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPK 410


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 246 SARSWSTEVYCPVPGLVPTAPSSRN 172
           S+ +W T  Y  V    P APS RN
Sbjct: 438 SSPAWGTSGYYDVSSTSPVAPSDRN 462


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 659 STCTWAKMALWLMRKKDRF*SIRV 588
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 469 EGQGSVLSTHDSSRYRC-ICESQPFL*GYREDLFGNIRIYCTRIDQKRSFFRMSHNAIF 642
           E  GS+L+TH++  +   +     F+  +  D  G   +YC+        F ++ N  F
Sbjct: 149 EASGSILTTHENKSFTLKLANELEFI--FFHDTRGKFSVYCSSSKDDAITFSINRNNNF 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,129
Number of Sequences: 5004
Number of extensions: 72479
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)