Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b18r
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)     206   1e-53
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        33   0.29 
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)                    30   1.6  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    30   1.6  
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    28   6.3  
SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 28   6.3  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)                      28   8.4  
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score =  206 bits (503), Expect = 1e-53
 Identities = 96/201 (47%), Positives = 135/201 (67%)
 Frame = -2

Query: 612 GSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERS 433
           G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  TL FM GG++E FE++
Sbjct: 62  GTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAGTLTFMVGGKEEGFEQA 121

Query: 432 LPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLN 253
             +L  MG    H G  G+GQ AK+ NNML+ ++ + TAE MN+GI++GL+ +++  ++N
Sbjct: 122 KDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVSMIGTAEAMNLGIRLGLDAEMIAKIIN 181

Query: 252 NSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPLGAV 73
           +SS R WS+EVY PVPG++   PSS NY GGF   LM KDL LA   +    +  P+G++
Sbjct: 182 SSSGRCWSSEVYNPVPGVLEDVPSSNNYQGGFMTALMTKDLGLAQNASSSTMTATPMGSL 241

Query: 72  ATQLYRIVQSRGYGQKDFSFV 10
           A Q+YRI+  +GY   DF  V
Sbjct: 242 AHQIYRIMCIKGYANMDFGSV 262


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/66 (31%), Positives = 38/66 (57%)
 Frame = -2

Query: 699 DVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD 520
           DV+++ L   + V    L   G+++  K+GS+ ID +T D N   ++  +A  KG+   +
Sbjct: 65  DVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHAVE 123

Query: 519 APVSGG 502
           AP++GG
Sbjct: 124 APLTGG 129


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -2

Query: 618 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFE 439
           + G ++ID    +     +      E+GL F  + VSGG  GA+    + M GG ++ + 
Sbjct: 139 ESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP-SLMPGGSEKAWP 197

Query: 438 RSLPLLKVMGAKQFH--C----GQIGSGQVAKLTNN 349
              P+ + + AK  +  C    G  GSG   K+ +N
Sbjct: 198 HIKPIFQAIAAKAGNDPCCDWVGGDGSGHFVKMVHN 233


>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
          Length = 864

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 30/94 (31%), Positives = 43/94 (45%)
 Frame = -2

Query: 342 MGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDG 163
           MG    A +E  +MG   GL   + L VL  SS RSW +  +     L P +  +  Y  
Sbjct: 592 MGGKEGAESEGGSMG---GLFLNIGLSVLAMSS-RSWLSYTHQSRVHLTPLSYETLEYAS 647

Query: 162 GFKNELMVKDLELASGMALGIRSPIPLGAVATQL 61
           GF +E   + +   +G  L I +   LGAV  Q+
Sbjct: 648 GFSSEQCPEGIVAIAGNTLRILALEKLGAVFNQV 681


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 597 DSSTIDPNVPKQIFPI-ALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLL 421
           ++ +  P    Q F I  L      +  P+SGGV G  +AT +  + G+K   + ++  L
Sbjct: 263 ETKSFAPPTTAQSFAIPGLSNAASTSKQPISGGVGGTSSATSSGASTGQKSSMQSAMKRL 322

Query: 420 KVMGAK 403
           +++  K
Sbjct: 323 QMVKKK 328


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 509 LEESWVLRTLPW---PSWPEVVKKTSKGPFLSSK*WELSSS 396
           LEES+ ++       PSWP     TS  P+L++K  +LS S
Sbjct: 166 LEESYTIQMTKCFTNPSWPVFEDSTSTSPYLTTKVSKLSHS 206


>SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 188 AVGTSPGTGQYTSVDQERADELFS 259
           A+GT   TGQYT  DQ+  D+  S
Sbjct: 63  AIGTCTRTGQYTRTDQKNLDKACS 86


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -2

Query: 528 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGS-GQVAKLTN 352
           F D P + GV+  +N  ++F+   +K D   +   L+ +G+K+  C  +    ++ K   
Sbjct: 70  FNDTPNTFGVLSKENGKISFV-DSQKYDHAINYAGLRDLGSKEIQCNLVRELLRIVKPGG 128

Query: 351 NMLMGITGMATAECMNM 301
           ++ +G   M   EC  M
Sbjct: 129 SIYLG-HNMEETECKVM 144


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 275  FGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQ--WNCLAPITLRRGRDLSKS 448
            F    +L+P  ++  + IPVMPI +L V +  C + + P    + L  I    G  L  S
Sbjct: 889  FSVGAVLLPSVLNPWLIIPVMPIVVLFVIIG-CMDELLPDVLLDALQLILFSVGAVLLPS 947

Query: 449  SLRP 460
             L P
Sbjct: 948  VLNP 951


>SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)
          Length = 1013

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 586 NRSECSQTDLPYSPRERAGIHRC 518
           N SEC + + P   RERA + RC
Sbjct: 46  NASECMERNGPKGKRERASVDRC 68


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 586 NRSECSQTDLPYSPRERAGIHRC 518
           N SEC + + P   RERA + RC
Sbjct: 206 NASECMERNGPKGKRERASVDRC 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,564,667
Number of Sequences: 59808
Number of extensions: 582665
Number of successful extensions: 1792
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1787
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)